Detailed information NTG0310838

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: DDV21_RS06740
• Genome accession: NZ_CP031733
• Coordinates: 1386878..1388980 (+)
• Length: 700 a.a.
• NCBI ID: WP_116877634.1
• Uniprot ID: -
• Organism: Streptococcus chenjunshii strain Z15
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1381878..1393980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDV21_RS06715 (DDV21_006715)	-	1383071..1383892 (-)	822	WP_116877630.1	N-acyl homoserine lactonase family protein	-
DDV21_RS06720 (DDV21_006720)	-	1383879..1384688 (-)	810	WP_162886294.1	SDR family oxidoreductase	-
DDV21_RS06725 (DDV21_006725)	-	1384715..1385278 (+)	564	WP_142917734.1	TetR/AcrR family transcriptional regulator	-
DDV21_RS06730 (DDV21_006730)	rplL	1385434..1385805 (-)	372	WP_116877633.1	50S ribosomal protein L7/L12	-
DDV21_RS06735 (DDV21_006735)	rplJ	1385879..1386379 (-)	501	WP_116877702.1	50S ribosomal protein L10	-
DDV21_RS06740 (DDV21_006740)	clpC	1386878..1388980 (+)	2103	WP_116877634.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
DDV21_RS06745 (DDV21_006745)	-	1389365..1390015 (+)	651	WP_116877635.1	deoxyribonuclease I	-
DDV21_RS06750 (DDV21_006750)	mmuM	1390022..1390972 (-)	951	WP_116877636.1	homocysteine S-methyltransferase	-
DDV21_RS06755 (DDV21_006755)	-	1391493..1392869 (-)	1377	WP_116877637.1	amino acid permease	-
DDV21_RS06760 (DDV21_006760)	yihA	1393191..1393790 (-)	600	WP_116877638.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 77641.71 Da
• Isoelectric Point: 4.9909

>NTDB_id=310838 DDV21_RS06740 WP_116877634.1 1386878..1388980(+) (clpC) [Streptococcus chenjunshii strain Z15]
MANYYNRDPFGNMDDIFNQLMGRMGGYNTENRRYLINGREITPEEFEQYRSTGKLPGNPEKQETAAAPKKDGMLAKLGTN
LTEEARQSHLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNLVKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGDLTVIGATTQDEYRNTIMK
NAALARRFNEVKVNAPSAQDTFHILMGIRTLYEQHHNVILPDKVLKAAIDYSIQYIPQRSLPDKAIDLIDMTAAHLAAQH
PVTDVQTLEAEIKRQKNQQEEAAAREDYEAALAAKTRIDDLQKQIDNHTEGQKVTATINDVAQSVERLTGIPVSNMGTSD
IERLKEMGERLQGKVIGQNEAVAAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKEAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYAIILLDEIEKADSQVITLLLQVLDDGRLTDGQGNTVDFKNTVI
IATSNAGFGHTLPDEADREKQDIMDRIALYFRPEFLNRFNGVIEFSHLSKEDLKEIVDLMLSEVEQTIAKKGIDLEVTEQ
AKTLLIELGYDEAMGARPLRRVIEQEIRDRITDFYLDHLDSKHLLADCKDRHIIISERKV

Nucleotide

• Length: 2103 bp

>NTDB_id=310838 DDV21_RS06740 WP_116877634.1 1386878..1388980(+) (clpC) [Streptococcus chenjunshii strain Z15]
ATGGCAAACTATTATAATCGCGATCCTTTTGGAAATATGGACGATATCTTCAACCAACTGATGGGGCGCATGGGAGGTTA
CAATACAGAAAACCGTCGCTATCTCATCAATGGTCGGGAAATTACCCCAGAAGAATTTGAACAGTACAGGTCAACTGGTA
AGCTTCCGGGAAATCCGGAAAAACAAGAAACAGCGGCTGCGCCTAAAAAAGACGGAATGCTGGCAAAGCTGGGAACCAAT
CTGACCGAAGAGGCGCGTCAGTCACACTTAGATCCGGTCATCGGACGTAATAAAGAGATTCAGGAAACTGCAGAAATCCT
TTCCCGACGAACCAAGAACAATCCTGTTCTAGTCGGCGATGCTGGTGTAGGTAAAACAGCTGTTGTAGAAGGATTAGCTC
AGGCAATCGTTAACGGCGATGTCCCTGCTGCTATCAAAAACAAAGAAATTATTTCCATTGATATCTCAGGCTTAGAAGCA
GGTACACAGTATCGCGGCAGTTTTGAGGAAAATATCCAAAATTTAGTTAAGGAAGTTAAAGACGCTGGTAACATCATTTT
ATTCTTTGATGAAATTCATCAAATCCTCGGTGCTGGAAGTACTGGCGGAGACAGTGGGTCAAAAGGTCTGGCGGATATTT
TGAAACCAGCTTTGTCACGCGGTGATTTAACTGTTATCGGGGCAACGACTCAGGACGAATACCGCAATACAATCATGAAA
AATGCTGCGCTTGCCCGCCGCTTTAATGAAGTTAAGGTCAACGCACCTTCTGCCCAAGATACTTTTCATATTCTGATGGG
AATTCGTACACTTTATGAACAGCACCACAATGTCATTTTGCCCGATAAAGTACTTAAGGCCGCTATTGATTACTCTATTC
AGTATATTCCGCAACGCAGCCTGCCCGATAAGGCTATTGACCTCATCGATATGACAGCAGCTCATTTAGCTGCTCAGCAT
CCTGTCACGGATGTCCAAACACTTGAAGCAGAGATTAAACGGCAAAAAAATCAACAGGAAGAAGCTGCAGCTCGTGAAGA
TTATGAAGCTGCACTCGCTGCTAAAACACGTATTGACGACCTGCAAAAGCAAATTGACAATCATACCGAAGGACAGAAAG
TCACAGCCACCATCAACGATGTTGCACAATCAGTCGAAAGACTGACAGGCATACCTGTCTCAAATATGGGGACCAGTGAT
ATTGAAAGACTGAAAGAAATGGGCGAACGCCTGCAGGGCAAAGTCATCGGACAAAATGAGGCTGTTGCTGCAGTGGCTCG
AGCGATTCGGCGCAATCGTGCCGGCTTTGATGAAGGAAACCGTCCAATCGGCAGTTTTCTCTTTGTCGGCCCTACTGGAG
TGGGGAAAACTGAATTAGCTAAACAGCTGGCTTTAGACATGTTTGGTTCCAAAGAAGCTATTATTCGACTAGACATGTCG
GAATACTCCGACCGCACAGCTGTTTCTAAACTGATTGGCACTACCGCCGGATATGTTGGATATGATGATAACAGCAATAC
CCTTACCGAACGTGTCCGCCGCAATCCTTATGCTATCATTCTGCTTGACGAAATCGAAAAAGCTGATAGTCAGGTTATCA
CTCTGCTTCTGCAAGTCCTGGATGACGGCCGGCTGACTGACGGACAAGGCAATACCGTTGATTTTAAAAACACGGTGATT
ATTGCAACTTCAAATGCTGGGTTTGGTCACACCCTTCCTGATGAAGCGGATAGAGAAAAGCAAGACATTATGGATCGAAT
CGCCCTTTACTTCCGTCCTGAATTTTTAAACCGCTTTAACGGAGTCATTGAATTTTCGCATCTAAGCAAGGAAGATTTAA
AAGAAATCGTTGATTTAATGCTCAGCGAGGTGGAACAGACCATAGCTAAGAAAGGGATTGACTTAGAAGTTACTGAACAG
GCTAAAACTCTTCTCATCGAACTGGGCTATGATGAAGCCATGGGTGCCCGTCCGCTTCGCAGGGTTATTGAACAGGAAAT
CCGTGACAGAATCACCGACTTCTATTTAGACCATCTTGACAGCAAGCACCTGTTAGCAGACTGCAAAGACAGACACATCA
TTATTTCTGAAAGGAAAGTCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-678)

• AAA lid domain (AAA_lid_9) (257-351)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-600)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.222	100	0.484
clpE	Streptococcus mutans UA159	46.31	98.714	0.457
clpE	Streptococcus pneumoniae Rx1	48.038	91	0.437
clpE	Streptococcus pneumoniae D39	48.038	91	0.437
clpE	Streptococcus pneumoniae R6	48.038	91	0.437
clpE	Streptococcus pneumoniae TIGR4	48.038	91	0.437
clpC	Bacillus subtilis subsp. subtilis str. 168	43.263	95.429	0.413
clpC	Streptococcus pneumoniae Rx1	43.791	87.429	0.383
clpC	Streptococcus pneumoniae D39	43.791	87.429	0.383
clpC	Streptococcus pneumoniae TIGR4	43.627	87.429	0.381
clpC	Streptococcus thermophilus LMD-9	42.903	88.571	0.38
clpC	Streptococcus thermophilus LMG 18311	42.742	88.571	0.379
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.512	88.714	0.377
clpC	Streptococcus mutans UA159	40.31	92.143	0.371