Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DDV21_RS01600 Genome accession   NZ_CP031733
Coordinates   297912..299273 (+) Length   453 a.a.
NCBI ID   WP_116877605.1    Uniprot ID   A0A372KNJ0
Organism   Streptococcus chenjunshii strain Z15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 292912..304273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS01575 (DDV21_001575) - 293898..294692 (-) 795 WP_116877536.1 formate/nitrite transporter family protein -
  DDV21_RS01580 (DDV21_001580) - 294952..296187 (-) 1236 WP_116877535.1 NAD(P)H-dependent oxidoreductase -
  DDV21_RS01585 (DDV21_001585) - 296203..296808 (-) 606 WP_116877534.1 NADPH-dependent FMN reductase -
  DDV21_RS01590 (DDV21_001590) - 296914..297273 (+) 360 WP_116877533.1 YbaN family protein -
  DDV21_RS01595 (DDV21_001595) - 297329..297775 (+) 447 WP_116877532.1 dUTP diphosphatase -
  DDV21_RS01600 (DDV21_001600) radA 297912..299273 (+) 1362 WP_116877605.1 DNA repair protein RadA Machinery gene
  DDV21_RS01605 (DDV21_001605) - 299440..300051 (+) 612 WP_116877531.1 hypothetical protein -
  DDV21_RS01610 (DDV21_001610) - 300069..301400 (+) 1332 WP_116877530.1 hypothetical protein -
  DDV21_RS01615 (DDV21_001615) - 301410..301724 (+) 315 WP_116877529.1 hypothetical protein -
  DDV21_RS01620 (DDV21_001620) - 301742..302053 (+) 312 WP_116877528.1 hypothetical protein -
  DDV21_RS01625 (DDV21_001625) - 302363..302857 (+) 495 WP_116877527.1 carbonic anhydrase -
  DDV21_RS01630 (DDV21_001630) - 302993..303745 (+) 753 WP_116877526.1 TIGR00266 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49469.82 Da        Isoelectric Point: 6.0954

>NTDB_id=310820 DDV21_RS01600 WP_116877605.1 297912..299273(+) (radA) [Streptococcus chenjunshii strain Z15]
MAKKRTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVETAEVKNARVSLTGQKTKPVKLNDIAAVQVNRTQTDLEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAHKGTVLYVSGEESAEQIKLRSERLGNIDSEFYLYAETNMQLIRSEIE
KLQPDFLVVDSIQTIMTPDISGVQGSVSQVREVTAELMQLAKTNNIAVFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQASGLVEILNPSQVFLEERLDGATGSAVVVTIEGSRPILAELQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVALASSYKEQPTDPKTAFIGEIGLTGEIR
RVNRIEQRIKEAAKLGFAKIYVPKSSLQGVEIPETIQVIGVRTVGQVLTNVFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=310820 DDV21_RS01600 WP_116877605.1 297912..299273(+) (radA) [Streptococcus chenjunshii strain Z15]
ATCGCAAAAAAAAGAACGACTTTTGTCTGTCAGGAATGCGGCTATAATTCACCAAAATATCTGGGACGCTGTCCTAACTG
CTCTTCCTGGTCCTCTTTTGTAGAGGAAGTTGAGACTGCTGAGGTTAAAAATGCCCGTGTATCTCTGACCGGACAGAAAA
CAAAGCCTGTTAAGCTCAATGATATTGCTGCTGTTCAGGTCAATCGAACGCAAACCGATTTAGAAGAATTTAACCGTGTC
CTGGGCGGCGGTGTTGTCCCCGGCAGTTTGGTTCTGATTGGCGGCGATCCCGGCATCGGCAAATCTACCCTGCTTTTGCA
GGTTTCGACTCAGCTGGCTCATAAAGGGACCGTTCTCTACGTTTCGGGAGAAGAGTCGGCCGAACAGATTAAACTGCGCA
GCGAGCGGCTGGGGAATATCGACAGTGAATTTTACCTTTATGCCGAGACCAATATGCAGCTGATTCGGTCAGAAATTGAA
AAGCTTCAGCCAGATTTCTTGGTGGTTGATTCTATTCAGACTATCATGACTCCTGATATCTCCGGAGTTCAGGGGTCTGT
CAGTCAGGTCCGGGAAGTAACAGCTGAGCTGATGCAGCTGGCTAAGACAAACAATATCGCTGTTTTTATTGTCGGACATG
TGACCAAGGAAGGGACGCTGGCCGGACCTCGTATGCTGGAACACATGGTAGACACCGTTTTGTATTTTGAAGGGGAACGG
CACCATACCTTTAGAATTTTGCGGGCAGTCAAAAACCGTTTCGGATCAACCAACGAAATCGGAATTTTTGAAATGCAGGC
CTCCGGTCTTGTTGAAATTCTCAATCCCAGCCAAGTCTTTTTAGAAGAACGTTTGGATGGGGCAACTGGTTCTGCTGTCG
TTGTAACGATAGAAGGAAGCCGGCCGATTCTGGCTGAGCTGCAGGCTTTGGTTACGCCTACCGTTTTCGGCAATGCCAAA
CGGACAACGACCGGACTTGATTTCAACCGAGTCAGCCTGATTATGGCCGTTTTAGAAAAACGCTGCGGACTCCTGCTTCA
GAATCAGGATGCCTATCTTAAATCGGCAGGCGGTGTGAGACTGGATGAACCAGCTATTGACTTAGCTGTGGCGGTAGCAC
TGGCATCAAGTTATAAGGAGCAGCCGACTGATCCTAAAACAGCCTTTATTGGCGAAATCGGGCTGACCGGTGAAATCCGC
CGGGTTAATCGGATTGAACAGCGGATTAAAGAAGCTGCTAAACTCGGTTTTGCCAAAATCTATGTGCCCAAAAGCTCCCT
GCAGGGTGTTGAAATCCCCGAAACGATCCAAGTCATCGGTGTCAGAACGGTCGGCCAGGTGTTAACGAACGTGTTTGAGT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-425)

AAA domain (AAA_25)

(62-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KNJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.513

99.779

0.843
  radA Streptococcus pneumoniae D39

84.513

99.779

0.843
  radA Streptococcus pneumoniae R6

84.513

99.779

0.843
  radA Streptococcus pneumoniae TIGR4

84.513

99.779

0.843
  radA Streptococcus mitis NCTC 12261

84.513

99.779

0.843
  radA Streptococcus mitis SK321

84.513

99.779

0.843
  radA Bacillus subtilis subsp. subtilis str. 168

61.283

99.779

0.611

Multiple sequence alignment