Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   DDV21_RS01415 Genome accession   NZ_CP031733
Coordinates   262014..264455 (+) Length   813 a.a.
NCBI ID   WP_116877565.1    Uniprot ID   A0A372KNF0
Organism   Streptococcus chenjunshii strain Z15     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 257014..269455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS01395 (DDV21_001395) rpsB 258825..259601 (+) 777 WP_116877569.1 30S ribosomal protein S2 -
  DDV21_RS01400 (DDV21_001400) tsf 259697..260737 (+) 1041 WP_116877568.1 translation elongation factor Ts -
  DDV21_RS01405 (DDV21_001405) - 260869..261333 (-) 465 WP_116877567.1 small multi-drug export protein -
  DDV21_RS01410 (DDV21_001410) - 261554..262009 (+) 456 WP_116877566.1 CtsR family transcriptional regulator -
  DDV21_RS01415 (DDV21_001415) clpC 262014..264455 (+) 2442 WP_116877565.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  DDV21_RS01420 (DDV21_001420) - 264642..265418 (+) 777 WP_116877607.1 MBL fold metallo-hydrolase -
  DDV21_RS01425 (DDV21_001425) tadA 265418..265891 (+) 474 WP_116877564.1 tRNA adenosine(34) deaminase TadA -
  DDV21_RS01435 (DDV21_001435) - 266806..268053 (+) 1248 WP_116877563.1 SAF domain-containing protein -
  DDV21_RS01440 (DDV21_001440) - 268127..268498 (+) 372 WP_116877562.1 transcriptional regulator GutM -
  DDV21_RS01445 (DDV21_001445) - 268513..268872 (+) 360 WP_116877561.1 PTS glucitol/sorbitol transporter subunit IIA -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 89943.24 Da        Isoelectric Point: 5.7568

>NTDB_id=310819 DDV21_RS01415 WP_116877565.1 262014..264455(+) (clpC) [Streptococcus chenjunshii strain Z15]
MSNYSFKMQEVFRLALYQAARYESPYLESWHILLAMVFIPDSVAGLSLAEYEADINTEEYEAAAILALGKVPKEDVETID
FVEQSPAVKRLLQLAEGISQVTGGKEVGTEHVLFAMLLTMDITATRLLEMVGFKMKDDGESVRLLDLRKSLERQAGFTKE
DLKAIHNLRKPKKTKVNTNFSDMMKPPGTAGELSEFTRDLTEMARLGQLEPVIGREKEISRMVQILSRKTKNNPVLVGDA
GVGKTALAYGLAQRIVNGSIPYELQDMKVLELDMMSVVAGTRFRGDFEERMNQIIADIEEDGHIILFIDELHTIMGSGSG
IDSTLDAANILKPALARGTLRTLGATTQEEYQKHIEKDAALSRRFAKVLIEEPNEAAAYEIVLGLKKSYEDYHNVVISEA
AALAAVKAAHRYLTSKHLPDSAIDLLDEASAQVQNMVKKEKPAYLTPADEAILAGDFKKASQFLKAAAKSSRPEPTPVTE
ADIMSTLSKLSGIPVEKLTQADSKKYLNLEKELHKRVIGQAAAVSAISRAIRRNQSGIRSGRRPIGSFMFLGPTGVGKTE
LAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQV
LDDGMLTDSRGRQVDFSNTIIIMTSNLGATALRDDKTVGFGAKAVSQDYQAMQGRILEELKHAYRPEFLNRIDEKVVFHS
LSQDDMREVVKIMVQPLINNLAEKEISLKFQPSALKHLAQDGYDPEMGARPLRRTLQTQVEDKLSELVLSGELTSGSAVK
IGFSKGRLKFALA

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=310819 DDV21_RS01415 WP_116877565.1 262014..264455(+) (clpC) [Streptococcus chenjunshii strain Z15]
ATGAGCAATTATTCGTTTAAAATGCAGGAAGTTTTTAGACTGGCTCTCTATCAGGCGGCTCGGTATGAGAGCCCTTATCT
TGAGAGCTGGCATATCTTGCTGGCTATGGTTTTTATTCCTGATTCTGTTGCCGGACTCAGTCTGGCAGAGTATGAGGCTG
ATATCAATACAGAAGAATATGAAGCAGCGGCTATCTTGGCTCTGGGCAAAGTTCCCAAAGAAGATGTTGAAACGATTGAT
TTTGTTGAGCAGTCTCCGGCAGTGAAGCGTCTGCTGCAGCTGGCTGAGGGCATCAGCCAAGTAACAGGGGGCAAAGAAGT
CGGGACAGAGCATGTTCTGTTTGCCATGCTGCTGACTATGGATATCACTGCTACACGGCTTCTGGAGATGGTCGGATTTA
AAATGAAAGACGACGGGGAATCGGTCCGTTTATTAGATCTGCGCAAATCTTTGGAAAGGCAGGCCGGCTTCACTAAGGAA
GATCTGAAAGCTATCCATAATTTACGTAAACCCAAGAAAACGAAAGTCAACACCAATTTTTCCGATATGATGAAGCCGCC
TGGAACTGCTGGTGAACTTTCTGAATTCACACGGGACCTGACAGAGATGGCGCGTCTGGGACAGCTGGAACCTGTTATTG
GCCGGGAGAAGGAAATTTCCCGCATGGTGCAGATTCTCAGCCGAAAAACGAAGAACAACCCAGTTTTAGTCGGTGATGCC
GGGGTAGGGAAGACCGCTCTGGCTTATGGTTTGGCTCAGCGCATTGTTAACGGCTCTATTCCTTATGAGCTGCAGGATAT
GAAGGTTCTTGAACTGGATATGATGAGTGTTGTTGCCGGAACACGTTTCCGCGGTGACTTTGAAGAGCGGATGAATCAAA
TCATTGCTGATATTGAGGAAGATGGCCACATCATCCTTTTTATAGACGAACTGCATACGATTATGGGTTCTGGCAGCGGC
ATTGACAGCACACTCGATGCCGCTAATATCCTGAAACCTGCACTTGCACGGGGAACACTTCGGACGCTTGGAGCAACCAC
TCAGGAAGAATATCAAAAACATATCGAAAAGGATGCAGCTCTGTCGCGCCGTTTTGCTAAGGTGCTGATTGAAGAACCGA
ATGAAGCAGCGGCATATGAGATCGTGCTTGGGCTAAAAAAATCTTACGAAGATTATCACAATGTTGTGATTTCAGAAGCA
GCGGCCCTAGCGGCTGTTAAAGCGGCTCACCGTTACCTGACAAGCAAGCATTTGCCGGATTCAGCCATTGATCTCTTAGA
CGAGGCGAGTGCACAAGTCCAGAATATGGTCAAAAAAGAAAAACCGGCTTATTTAACACCGGCAGATGAAGCGATTTTGG
CAGGGGATTTTAAGAAGGCTTCGCAATTTTTAAAAGCAGCAGCCAAGTCCAGCCGTCCTGAACCAACTCCGGTGACGGAA
GCTGATATTATGAGCACTTTGAGCAAGCTGTCTGGCATTCCGGTTGAAAAACTGACACAGGCAGACAGTAAAAAATACCT
TAATTTAGAAAAAGAGCTGCATAAGCGTGTTATCGGTCAGGCAGCCGCTGTCTCCGCAATCAGCCGGGCTATCCGCCGGA
ACCAGTCTGGGATCCGCAGCGGCAGACGCCCGATTGGATCTTTCATGTTTCTGGGGCCGACAGGTGTCGGTAAAACGGAA
TTGGCAAAAGCTTTGGCAGAAGTCCTTTTTGATGATGAATCAGCTCTGATTCGTTTTGATATGTCAGAATATATGGAGAA
ATTTGCAGCCAGCCGTCTCAATGGAGCGCCGCCCGGATATGTGGGCTATGAAGAAGGCGGTGAATTGACTGAAAAAGTCC
GCAATAAACCTTATTCAGTCCTGCTTTTTGATGAAGTCGAAAAAGCCCATCCGGATATTTTCAATGTTCTGCTGCAAGTT
CTTGACGATGGAATGCTGACCGACAGCCGCGGCCGCCAGGTTGATTTTTCCAATACAATCATTATTATGACCAGCAACTT
AGGAGCAACAGCTCTGCGCGATGATAAAACTGTCGGTTTTGGTGCCAAAGCTGTCAGTCAGGATTATCAAGCGATGCAGG
GCAGGATTCTAGAAGAGCTCAAACATGCCTATCGGCCAGAATTTCTTAATCGAATTGATGAAAAGGTGGTTTTCCACAGC
TTAAGCCAAGACGATATGCGTGAAGTGGTTAAGATTATGGTGCAGCCTTTGATCAACAATCTGGCAGAAAAAGAGATTAG
TCTTAAGTTTCAGCCTTCAGCCTTAAAACATCTGGCTCAAGACGGCTATGATCCTGAAATGGGGGCTCGGCCTCTGCGCC
GGACCCTGCAGACTCAGGTTGAGGACAAACTGTCTGAGCTGGTTCTCTCGGGAGAATTAACCAGCGGCAGTGCGGTCAAG
ATTGGCTTCTCAAAAGGGCGATTAAAATTTGCCCTCGCCTGA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(375-451)

AAA domain (Cdc48 subfamily) (AAA_2)

(543-714)

ATPase family associated with various cellular activities (AAA) (AAA)

(235-367)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(721-801)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KNF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

78.272

99.631

0.78
  clpC Streptococcus thermophilus LMG 18311

71.534

100

0.717
  clpC Streptococcus thermophilus LMD-9

71.288

100

0.715
  clpC Streptococcus pneumoniae Rx1

67.237

100

0.677
  clpC Streptococcus pneumoniae D39

67.237

100

0.677
  clpC Streptococcus pneumoniae TIGR4

67.115

100

0.675
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

49.457

100

0.504
  clpC Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.444
  clpE Streptococcus mutans UA159

48.706

76.015

0.37

Multiple sequence alignment