Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D0C16_RS22775 Genome accession   NZ_CP031728
Coordinates   5484340..5485710 (+) Length   456 a.a.
NCBI ID   WP_151034491.1    Uniprot ID   A0A5J6PEP4
Organism   Cellvibrio sp. KY-GH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5479340..5490710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0C16_RS22765 (D0C16_23080) - 5480787..5483138 (+) 2352 WP_151034489.1 hypothetical protein -
  D0C16_RS22770 (D0C16_23085) - 5483323..5484243 (+) 921 WP_151034490.1 PDC sensor domain-containing protein -
  D0C16_RS22775 (D0C16_23090) radA 5484340..5485710 (+) 1371 WP_151034491.1 DNA repair protein RadA Machinery gene
  D0C16_RS22780 (D0C16_23095) - 5485730..5486566 (-) 837 WP_151034492.1 ABC transporter substrate-binding protein -
  D0C16_RS22785 (D0C16_23100) - 5486580..5486951 (-) 372 WP_151034494.1 PilZ domain-containing protein -
  D0C16_RS22790 (D0C16_23105) - 5486997..5487383 (-) 387 WP_151034495.1 PilZ domain-containing protein -
  D0C16_RS22795 (D0C16_23110) - 5487581..5488492 (+) 912 WP_151034496.1 ROK family protein -
  D0C16_RS22800 (D0C16_23115) - 5488503..5489339 (+) 837 WP_151034498.1 ABC transporter substrate-binding protein -
  D0C16_RS22805 (D0C16_23120) - 5489422..5490423 (+) 1002 WP_225318824.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48874.20 Da        Isoelectric Point: 6.6896

>NTDB_id=310805 D0C16_RS22775 WP_151034491.1 5484340..5485710(+) (radA) [Cellvibrio sp. KY-GH-1]
MSTKNKTAFVCNECGADYKKWQGQCTECGAWNSVTEVRLGPTPSNRSAKFEGYAGGATGNKIQTLAEIALTDVPRFSSGA
GEFDRVLGGGFVPGSVVLIGGNPGAGKSTLLLQTLCNLARVMPALYITGEESLQQVAMRAQRLGLPTDQLQMLSETSVES
ICATAQQVAPKVMVIDSIQVMHMEDISSAPGSVSQVRESAAYLTRFAKQTGTVLVLVGHVTKDGSLAGPKVLEHMIDCSI
LLEGDNDSRYRTLRGNKNRFGAVNELGVFAMTEQGMREVNNPSAIFLQRAEDAAPGSVVMVMWEGTRPLLIEIQALVDDS
HLGNPRRVAVGMDQNRLAMLLAVLHRHGGIMVGDQDVFVNVVGGVKVMETSADLAVLLAIVSSFRDRILPQDLIVFGEVG
LSGEIRPVPSGHERLREAAKHGFKRAIVPFANAPREKNLGIEVVAVKNLQEALNAL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=310805 D0C16_RS22775 WP_151034491.1 5484340..5485710(+) (radA) [Cellvibrio sp. KY-GH-1]
ATGTCCACAAAAAATAAAACTGCATTTGTCTGTAATGAGTGCGGTGCTGATTATAAAAAATGGCAAGGCCAATGCACTGA
GTGTGGGGCCTGGAACTCGGTAACAGAAGTGCGCCTTGGGCCAACGCCTTCCAATCGCTCGGCCAAATTTGAAGGTTATG
CGGGCGGGGCGACCGGTAATAAAATTCAAACGCTCGCTGAAATTGCACTGACGGATGTGCCCCGTTTTAGCAGTGGTGCC
GGAGAATTCGATCGCGTGCTGGGCGGCGGGTTTGTACCCGGCTCGGTTGTGTTGATTGGTGGTAATCCCGGCGCAGGAAA
ATCAACACTCTTGCTGCAAACCCTGTGTAATCTCGCACGCGTCATGCCTGCACTCTATATCACCGGCGAAGAGTCGCTCC
AGCAGGTGGCCATGCGTGCACAGCGTTTGGGTTTGCCCACGGACCAATTGCAAATGCTGAGTGAAACCAGCGTTGAATCT
ATTTGCGCAACAGCGCAGCAGGTTGCGCCTAAAGTGATGGTGATCGACTCCATTCAGGTGATGCATATGGAAGATATTTC
TTCCGCCCCTGGGTCGGTTTCACAAGTACGCGAGAGCGCGGCCTATTTAACGCGCTTCGCCAAGCAAACTGGCACAGTGC
TGGTGCTGGTAGGTCACGTCACCAAAGATGGTTCGCTCGCAGGCCCCAAAGTGCTGGAGCACATGATTGACTGCTCGATT
TTATTAGAAGGCGATAACGATTCGCGCTATCGCACCTTGCGCGGTAATAAAAACCGGTTCGGTGCGGTGAATGAATTGGG
GGTGTTCGCCATGACCGAGCAGGGCATGCGCGAGGTAAATAATCCCTCTGCAATTTTTTTGCAGCGCGCGGAAGATGCAG
CACCCGGTTCAGTGGTAATGGTGATGTGGGAAGGTACACGGCCATTGCTGATTGAAATTCAAGCCCTGGTGGACGACAGC
CATCTTGGTAATCCACGGCGCGTGGCCGTGGGGATGGATCAAAACCGTCTCGCCATGCTGCTCGCCGTTTTGCATCGCCA
CGGTGGAATTATGGTGGGCGATCAGGATGTATTTGTGAATGTGGTCGGCGGTGTAAAAGTGATGGAGACCAGTGCTGACC
TCGCGGTATTGTTGGCGATAGTTTCCAGCTTTCGCGATCGCATTTTGCCGCAGGATTTAATTGTGTTTGGCGAAGTCGGC
TTATCGGGTGAGATTCGCCCGGTGCCCAGTGGTCATGAGCGTTTGCGTGAAGCGGCCAAGCACGGCTTTAAACGCGCGAT
AGTTCCATTTGCCAATGCGCCGCGTGAAAAAAATTTAGGAATTGAAGTGGTGGCTGTAAAAAATTTGCAAGAAGCGCTCA
ACGCACTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6PEP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.344

99.342

0.48
  radA Streptococcus pneumoniae Rx1

43.573

100

0.439
  radA Streptococcus pneumoniae D39

43.573

100

0.439
  radA Streptococcus pneumoniae R6

43.573

100

0.439
  radA Streptococcus pneumoniae TIGR4

43.573

100

0.439
  radA Streptococcus mitis SK321

43.573

100

0.439
  radA Streptococcus mitis NCTC 12261

43.355

100

0.436

Multiple sequence alignment