Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D0C16_RS15935 | Genome accession | NZ_CP031728 |
| Coordinates | 3782814..3783947 (-) | Length | 377 a.a. |
| NCBI ID | WP_151033265.1 | Uniprot ID | A0A5J6PAG9 |
| Organism | Cellvibrio sp. KY-GH-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3777814..3788947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0C16_RS15910 (D0C16_16170) | trmB | 3778826..3779572 (-) | 747 | WP_225318715.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| D0C16_RS15915 (D0C16_16175) | - | 3779604..3779987 (-) | 384 | WP_151033262.1 | DUF423 domain-containing protein | - |
| D0C16_RS15920 (D0C16_16180) | rpoH | 3780077..3780937 (-) | 861 | WP_151033263.1 | RNA polymerase sigma factor RpoH | - |
| D0C16_RS15925 (D0C16_16185) | ftsX | 3781060..3782133 (-) | 1074 | WP_225318716.1 | permease-like cell division protein FtsX | - |
| D0C16_RS15930 (D0C16_16190) | ftsE | 3782130..3782798 (-) | 669 | WP_151033264.1 | cell division ATP-binding protein FtsE | - |
| D0C16_RS15935 (D0C16_16195) | pilA | 3782814..3783947 (-) | 1134 | WP_151033265.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| D0C16_RS15940 (D0C16_16200) | rsmD | 3784058..3784663 (+) | 606 | WP_151033266.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| D0C16_RS15945 (D0C16_16205) | - | 3784672..3786246 (-) | 1575 | WP_151033267.1 | carbohydrate-binding protein | - |
| D0C16_RS15950 (D0C16_16210) | coaD | 3786458..3786937 (+) | 480 | WP_151033268.1 | pantetheine-phosphate adenylyltransferase | - |
| D0C16_RS15955 (D0C16_16215) | mutM | 3786956..3787768 (-) | 813 | WP_151033269.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
| D0C16_RS15960 (D0C16_16220) | - | 3788037..3788681 (+) | 645 | WP_151033270.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 40478.21 Da Isoelectric Point: 4.8424
>NTDB_id=310795 D0C16_RS15935 WP_151033265.1 3782814..3783947(-) (pilA) [Cellvibrio sp. KY-GH-1]
MFFNLFKKSDKSEADKVNEASPETAVEVQPDVSEILDETLVENKKEPFEASAEVVAEAPVPAEPAPTKLGFFARIKQGLS
RTSSHFAEGLGNLFLGRKSIDEDLFEELETQLLLADVGMEATSEIIDNLTARVARKQLNDADALYKALRDQLADLLKPVE
QPLVVDSAKAPFVILVVGVNGVGKTTTIGKLAKRLQNEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSAS
VIYDALNAAKARGIDVVIADTAGRLHNKNHLMEELAKVKRVMAKLDASAPHEVLLVLDAGTGQNAVNQAEQFRDAAGVTG
LVLTKLDGTAKGGVIFALSKKFSLPVRFIGVGESIEDLQPFAAEPFIKALFNQADAN
MFFNLFKKSDKSEADKVNEASPETAVEVQPDVSEILDETLVENKKEPFEASAEVVAEAPVPAEPAPTKLGFFARIKQGLS
RTSSHFAEGLGNLFLGRKSIDEDLFEELETQLLLADVGMEATSEIIDNLTARVARKQLNDADALYKALRDQLADLLKPVE
QPLVVDSAKAPFVILVVGVNGVGKTTTIGKLAKRLQNEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSAS
VIYDALNAAKARGIDVVIADTAGRLHNKNHLMEELAKVKRVMAKLDASAPHEVLLVLDAGTGQNAVNQAEQFRDAAGVTG
LVLTKLDGTAKGGVIFALSKKFSLPVRFIGVGESIEDLQPFAAEPFIKALFNQADAN
Nucleotide
Download Length: 1134 bp
>NTDB_id=310795 D0C16_RS15935 WP_151033265.1 3782814..3783947(-) (pilA) [Cellvibrio sp. KY-GH-1]
ATGTTTTTCAATCTGTTTAAAAAATCTGATAAGTCAGAAGCCGATAAGGTTAACGAAGCCAGCCCTGAAACAGCGGTTGA
AGTCCAGCCGGATGTTTCTGAAATCCTCGATGAAACTCTTGTCGAAAACAAGAAAGAGCCTTTTGAGGCCAGTGCTGAAG
TGGTTGCTGAGGCGCCAGTGCCCGCTGAACCTGCGCCAACTAAACTGGGCTTCTTTGCCCGTATCAAGCAGGGTTTGAGT
CGCACTTCCAGTCATTTTGCCGAAGGCTTGGGCAATCTGTTTCTTGGTCGCAAGTCCATTGATGAGGATCTATTCGAAGA
ACTGGAAACCCAGTTGTTGCTGGCTGACGTGGGTATGGAAGCTACCAGCGAAATTATCGATAACCTCACCGCGCGGGTGG
CGCGCAAACAGTTGAATGACGCCGATGCACTCTACAAGGCGTTACGTGACCAACTGGCTGACCTTTTAAAGCCCGTCGAG
CAACCACTGGTAGTTGATTCCGCCAAAGCGCCCTTTGTAATTCTGGTGGTGGGTGTCAACGGCGTAGGCAAAACCACCAC
CATCGGCAAGTTGGCCAAACGTCTGCAAAATGAAGGTAAAAAAGTCATGTTGGCGGCGGGGGATACATTCCGCGCGGCGG
CGGTCGAACAACTACAAGTCTGGGGTGAGCGCAACAATGTACCGGTAATCGCCCAGCACACCGGCGCCGATTCCGCCTCG
GTAATTTATGACGCGCTTAATGCAGCCAAGGCGCGCGGTATTGATGTGGTGATTGCCGATACAGCTGGTCGTCTGCACAA
CAAGAACCACTTGATGGAGGAGTTGGCCAAGGTTAAGCGAGTGATGGCCAAATTGGACGCGTCTGCTCCACACGAAGTAC
TGTTGGTACTGGATGCGGGCACCGGTCAAAACGCGGTTAATCAGGCTGAACAATTCCGCGACGCGGCAGGCGTCACCGGT
TTGGTGCTGACCAAACTGGATGGGACCGCCAAAGGCGGCGTGATTTTCGCGCTGAGCAAAAAATTTAGCCTGCCAGTGCG
CTTTATCGGGGTAGGCGAGTCTATCGAAGACCTGCAACCCTTTGCCGCTGAGCCCTTTATCAAAGCCCTGTTTAATCAGG
CCGACGCAAATTAA
ATGTTTTTCAATCTGTTTAAAAAATCTGATAAGTCAGAAGCCGATAAGGTTAACGAAGCCAGCCCTGAAACAGCGGTTGA
AGTCCAGCCGGATGTTTCTGAAATCCTCGATGAAACTCTTGTCGAAAACAAGAAAGAGCCTTTTGAGGCCAGTGCTGAAG
TGGTTGCTGAGGCGCCAGTGCCCGCTGAACCTGCGCCAACTAAACTGGGCTTCTTTGCCCGTATCAAGCAGGGTTTGAGT
CGCACTTCCAGTCATTTTGCCGAAGGCTTGGGCAATCTGTTTCTTGGTCGCAAGTCCATTGATGAGGATCTATTCGAAGA
ACTGGAAACCCAGTTGTTGCTGGCTGACGTGGGTATGGAAGCTACCAGCGAAATTATCGATAACCTCACCGCGCGGGTGG
CGCGCAAACAGTTGAATGACGCCGATGCACTCTACAAGGCGTTACGTGACCAACTGGCTGACCTTTTAAAGCCCGTCGAG
CAACCACTGGTAGTTGATTCCGCCAAAGCGCCCTTTGTAATTCTGGTGGTGGGTGTCAACGGCGTAGGCAAAACCACCAC
CATCGGCAAGTTGGCCAAACGTCTGCAAAATGAAGGTAAAAAAGTCATGTTGGCGGCGGGGGATACATTCCGCGCGGCGG
CGGTCGAACAACTACAAGTCTGGGGTGAGCGCAACAATGTACCGGTAATCGCCCAGCACACCGGCGCCGATTCCGCCTCG
GTAATTTATGACGCGCTTAATGCAGCCAAGGCGCGCGGTATTGATGTGGTGATTGCCGATACAGCTGGTCGTCTGCACAA
CAAGAACCACTTGATGGAGGAGTTGGCCAAGGTTAAGCGAGTGATGGCCAAATTGGACGCGTCTGCTCCACACGAAGTAC
TGTTGGTACTGGATGCGGGCACCGGTCAAAACGCGGTTAATCAGGCTGAACAATTCCGCGACGCGGCAGGCGTCACCGGT
TTGGTGCTGACCAAACTGGATGGGACCGCCAAAGGCGGCGTGATTTTCGCGCTGAGCAAAAAATTTAGCCTGCCAGTGCG
CTTTATCGGGGTAGGCGAGTCTATCGAAGACCTGCAACCCTTTGCCGCTGAGCCCTTTATCAAAGCCCTGTTTAATCAGG
CCGACGCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
53.425 |
96.817 |
0.517 |