Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D0B88_RS09585 Genome accession   NZ_CP031727
Coordinates   2260265..2261635 (+) Length   456 a.a.
NCBI ID   WP_007643030.1    Uniprot ID   I3IA30
Organism   Cellvibrio sp. KY-YJ-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2255265..2266635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B88_RS09570 (D0B88_09645) - 2255786..2257039 (+) 1254 WP_151056776.1 hypothetical protein -
  D0B88_RS18995 - 2257032..2259188 (+) 2157 WP_191966407.1 papain-like cysteine protease family protein -
  D0B88_RS09580 (D0B88_09655) - 2259335..2260255 (+) 921 WP_151056778.1 hypothetical protein -
  D0B88_RS09585 (D0B88_09660) radA 2260265..2261635 (+) 1371 WP_007643030.1 DNA repair protein RadA Machinery gene
  D0B88_RS09590 (D0B88_09665) - 2261655..2262032 (-) 378 WP_007643028.1 PilZ domain-containing protein -
  D0B88_RS09595 (D0B88_09670) - 2262073..2262477 (-) 405 WP_151056780.1 PilZ domain-containing protein -
  D0B88_RS09600 (D0B88_09675) - 2262650..2263558 (+) 909 WP_007643024.1 ROK family protein -
  D0B88_RS09605 (D0B88_09680) - 2263560..2264483 (+) 924 WP_151056782.1 ABC transporter substrate-binding protein -
  D0B88_RS09610 (D0B88_09685) - 2264506..2265507 (+) 1002 WP_225318308.1 iron ABC transporter permease -
  D0B88_RS09615 (D0B88_09690) - 2265509..2266330 (+) 822 WP_151056784.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48776.18 Da        Isoelectric Point: 6.8922

>NTDB_id=310769 D0B88_RS09585 WP_007643030.1 2260265..2261635(+) (radA) [Cellvibrio sp. KY-YJ-3]
MSTKTKSAFVCNECGADYKKWQGQCTECGAWNSLSEVRLGPTPTNRAAKFEGYAGGATGNKIQTLAEISLNDVPRFSSGA
GEFDRVLGGGFVPGSVVLIGGNPGAGKSTLLLQTLCNLARTMPALYITGEESLQQVAMRAQRLGLPTDQLQMLSETSVEA
ICAIAQKVAPKVMVIDSIQVMHMEDIASAPGSVSQVRESAAYLTRFAKQTGTVLILVGHVTKDGSLAGPKVLEHMIDCSI
LLEGDNDSRFRTLRGNKNRFGAVNELGVFAMTEQGMREVSNPSAIFLQRAEDASSGSVVMVMWEGTRPLLIEIQALVDDS
HLGNPRRVAVGMDQNRLAMLLAVLHRHGGIMVGDQDVFVNVVGGVKVMETSADLALLLAVVSSFRDRVLPQDLIVFGEVG
LSGEIRPVPSGHERLREAAKHGFKRAIVPFANAPRDKQLGIEVVAVKNLQEALAAL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=310769 D0B88_RS09585 WP_007643030.1 2260265..2261635(+) (radA) [Cellvibrio sp. KY-YJ-3]
GTGAGTACAAAAACCAAAAGCGCGTTTGTCTGCAACGAATGTGGTGCGGATTATAAAAAGTGGCAAGGGCAGTGCACGGA
GTGCGGTGCCTGGAATAGTTTGAGTGAAGTGCGCTTGGGGCCAACACCCACCAATCGCGCAGCGAAATTTGAAGGTTACG
CCGGTGGTGCCACGGGGAATAAAATCCAAACCCTTGCTGAAATATCGCTCAATGATGTGCCGCGTTTTAGCAGTGGTGCA
GGTGAGTTTGACCGGGTGCTCGGCGGTGGTTTTGTACCGGGTTCGGTAGTGTTAATTGGCGGTAACCCGGGCGCGGGTAA
ATCCACCTTGCTGTTGCAAACCCTGTGCAATTTAGCGCGCACTATGCCTGCGCTGTACATCACCGGTGAGGAGTCACTGC
AGCAAGTGGCCATGCGCGCCCAGCGTTTAGGGTTGCCGACCGATCAATTACAAATGCTGAGCGAAACCAGCGTGGAAGCC
ATTTGTGCGATTGCGCAAAAAGTTGCGCCCAAGGTGATGGTGATCGACTCAATTCAAGTGATGCACATGGAGGATATTGC
CTCCGCCCCCGGTTCGGTATCGCAAGTGCGCGAGAGTGCGGCTTACCTCACGCGGTTTGCGAAACAGACCGGCACAGTAT
TAATTTTAGTGGGCCACGTCACCAAAGATGGTTCACTCGCCGGCCCCAAAGTGCTGGAGCATATGATCGATTGTTCGATT
TTGTTAGAGGGCGATAACGACTCGCGCTTCCGCACGTTACGCGGCAATAAAAACCGTTTTGGTGCGGTAAACGAATTGGG
TGTGTTTGCCATGACCGAGCAGGGCATGCGCGAAGTGAGCAACCCCTCGGCCATTTTTTTGCAGCGCGCAGAGGATGCAT
CATCCGGTTCCGTGGTGATGGTGATGTGGGAGGGGACGCGCCCGCTGTTAATAGAAATCCAAGCACTGGTGGATGACAGT
CACCTCGGCAACCCGCGCCGTGTTGCGGTAGGTATGGATCAAAATCGCCTCGCCATGCTGTTGGCCGTGTTGCATCGTCA
CGGCGGCATTATGGTGGGCGATCAGGATGTATTTGTGAACGTGGTAGGTGGCGTGAAGGTAATGGAGACCAGTGCAGATT
TGGCACTGTTGCTCGCGGTAGTCTCCAGCTTTCGCGACCGGGTATTGCCGCAGGATTTAATTGTGTTTGGCGAAGTGGGT
TTATCGGGAGAGATTCGCCCGGTACCCAGTGGTCACGAGCGTTTGCGCGAGGCGGCCAAACACGGTTTCAAACGCGCCAT
AGTCCCGTTTGCAAACGCCCCGCGCGATAAACAGTTGGGGATAGAGGTGGTGGCGGTAAAAAATTTGCAGGAAGCTTTAG
CGGCGCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(88-224)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3IA30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

99.342

0.487
  radA Streptococcus pneumoniae Rx1

42.544

100

0.425
  radA Streptococcus pneumoniae D39

42.544

100

0.425
  radA Streptococcus pneumoniae TIGR4

42.544

100

0.425
  radA Streptococcus pneumoniae R6

42.544

100

0.425
  radA Streptococcus mitis NCTC 12261

42.325

100

0.423
  radA Streptococcus mitis SK321

42.699

99.123

0.423

Multiple sequence alignment