Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SaO408_RS00135 Genome accession   NZ_CP038270
Coordinates   30219..31019 (+) Length   266 a.a.
NCBI ID   WP_025174640.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 25219..36019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS00120 (SaO408_0021) walK 25890..27716 (+) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -
  SaO408_RS00125 (SaO408_0022) yycH 27709..29043 (+) 1335 WP_001060143.1 two-component system activity regulator YycH -
  SaO408_RS00130 (SaO408_0023) yycI 29044..29832 (+) 789 WP_001104162.1 two-component system regulatory protein YycI -
  SaO408_RS00135 (SaO408_0024) vicX 30219..31019 (+) 801 WP_025174640.1 MBL fold metallo-hydrolase Regulator
  SaO408_RS00140 (SaO408_0025) adsA 31246..33564 (+) 2319 WP_000645760.1 LPXTG-anchored adenosine synthase AdsA -
  SaO408_RS00150 (SaO408_0026) rlmH 33932..34411 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SaO408_RS00155 (SaO408_0027) - 34506..35363 (+) 858 WP_078103777.1 DUF1837 domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30283.43 Da        Isoelectric Point: 6.3392

>NTDB_id=310744 SaO408_RS00135 WP_025174640.1 30219..31019(+) (vicX) [Staphylococcus aureus strain O408 isolate B115]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIQDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPTDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=310744 SaO408_RS00135 WP_025174640.1 30219..31019(+) (vicX) [Staphylococcus aureus strain O408 isolate B115]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TTTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTCAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATCCCTACGGATCAGAAATTCATTTTTAATCC
TTATGAAACAAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAATGTGTCACATGATGCAATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTGACAGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACTTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474