Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BEN71_RS17025 Genome accession   NZ_CP031716
Coordinates   3415802..3418027 (+) Length   741 a.a.
NCBI ID   WP_068975103.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3410802..3423027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS17000 (BEN71_17000) lnt 3411211..3412770 (+) 1560 WP_068975108.1 apolipoprotein N-acyltransferase -
  BEN71_RS17005 (BEN71_17005) - 3412851..3413276 (+) 426 WP_068975107.1 GFA family protein -
  BEN71_RS17010 (BEN71_17010) - 3413333..3413668 (-) 336 WP_068975106.1 hypothetical protein -
  BEN71_RS17015 (BEN71_17015) gspG 3413951..3414388 (-) 438 WP_068975105.1 type II secretion system major pseudopilin GspG -
  BEN71_RS17020 (BEN71_17020) gspF 3414442..3415647 (-) 1206 WP_068975104.1 type II secretion system inner membrane protein GspF -
  BEN71_RS17025 (BEN71_17025) priA 3415802..3418027 (+) 2226 WP_068975103.1 primosomal protein N' Machinery gene
  BEN71_RS17030 (BEN71_17030) - 3418045..3420558 (-) 2514 WP_068975102.1 tetratricopeptide repeat protein -
  BEN71_RS17035 (BEN71_17035) - 3420637..3420909 (-) 273 WP_068975101.1 hypothetical protein -
  BEN71_RS17040 (BEN71_17040) - 3420941..3421408 (-) 468 WP_068975100.1 Holliday junction resolvase-like protein -
  BEN71_RS17045 (BEN71_17045) - 3421552..3422196 (+) 645 WP_068975099.1 ParA family protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84377.61 Da        Isoelectric Point: 8.7224

>NTDB_id=310696 BEN71_RS17025 WP_068975103.1 3415802..3418027(+) (priA) [Acinetobacter wuhouensis strain WCHA60]
MPNNIDTPTPIYRVQVAVPVYLNDCFDYQVSPEQYAQAEIGARVAVSFGRQNLIGIIVKKIPIDEPIDSHFKLKFITELL
DDQAILDAKVLSLLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARIWKVLDLNAEDKVKRSEKQQEAYKILKLHPKG
TQENILNLSGVETATLKALEKKEIVRCDLEEQNFKPEPVQLAQMPLTPNEDQKKAIQNILKSQNKYHAYLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDTKRLQAWQHAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVAMYRTHLENCPIILGSATPSIDSYYLARQDKLTRIELNQRAGTAVMPKMHL
IDLKVAKKQNGLSDSLIAEIKKRLEKKEQVLIFLNRRGYAPVLICESCGWQANCPHCDAHFTLHLKPYQHLHCHHCGTIN
RMPDACPSCNQTQLKPIGMGTAKVEETLNELFPNFPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLIDKDYRAFAKQTLKDRQAALM
PPCRYAIMIRCESKHQEENLKFLTEMTQLLRQNSEENLIDIWGPIPAPMERKAGRYQSHVVLLSQDRAKMHFYVRQWWAN
LLHSKPSSMKVTIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=310696 BEN71_RS17025 WP_068975103.1 3415802..3418027(+) (priA) [Acinetobacter wuhouensis strain WCHA60]
ATGCCGAATAATATTGATACGCCGACACCAATTTACCGAGTTCAAGTTGCTGTACCTGTCTATTTGAACGACTGCTTTGA
TTATCAAGTCAGTCCTGAACAATATGCACAGGCAGAGATCGGTGCTCGCGTGGCGGTATCTTTTGGTCGACAAAATCTGA
TTGGCATCATTGTAAAGAAAATCCCCATTGATGAGCCCATTGATTCACATTTCAAACTTAAATTCATTACTGAACTGTTA
GATGATCAGGCCATTTTAGATGCGAAAGTTTTAAGTTTATTGACATGGTCTGCGCAATATTATCAATTTCCAATCGGAGA
AGTGATTCAAACTGCTTTACCGACCTTATTACGTCAAGGAAAGCCCTACAATTTATTGGCACGTATTTGGAAAGTACTCG
ATTTAAATGCTGAAGACAAAGTAAAGCGTTCCGAGAAACAGCAAGAAGCTTATAAAATTTTAAAATTGCATCCCAAAGGG
ACACAGGAAAATATTCTCAATCTTAGCGGTGTAGAAACAGCGACGTTAAAAGCACTTGAAAAGAAAGAGATTGTTCGTTG
TGATTTAGAAGAACAAAACTTTAAGCCTGAGCCTGTGCAGTTGGCGCAGATGCCACTGACACCGAATGAAGACCAAAAGA
AAGCTATTCAAAATATTTTAAAATCTCAAAATAAATATCATGCATATTTACTCGATGGTTTAACTGGTAGTGGTAAAACT
GAAGTTTATTTGCAAGTCATGCATGAGGTATTGAAACAAGGCAAGCAAGTTTTGGTTTTAGTGCCTGAAATTGGTTTAAC
CCCACAAACTATTAGCCGTTTCCAATCCCGCTTTCATTGCAATATTGCTCTGCTCCATTCAGGTTTAAATGACACTAAAC
GTCTACAAGCTTGGCAACATGCACAGACGGGTAAAGCGTCTATTATTTTGGGTACACGTTCAGCGATTTATACGCCATTA
CCAAATCTGGGTTTGATCATTTTAGATGAGGAACATGATCTCTCATTTAAACAGCAAGAAGGCTTCCGTTATCATGCACG
TGATGTGGCGATGTATCGTACGCACTTGGAAAATTGTCCGATTATTTTAGGTTCAGCGACGCCAAGTATTGACAGTTATT
ATTTAGCACGTCAGGACAAATTGACTCGCATCGAATTGAACCAACGTGCAGGCACGGCGGTGATGCCGAAAATGCATTTA
ATTGATTTAAAAGTCGCGAAAAAACAAAATGGCTTAAGCGATAGTTTAATTGCCGAAATTAAAAAACGTTTAGAGAAAAA
AGAACAGGTTTTAATTTTTCTCAACCGTCGAGGTTATGCCCCTGTTTTAATTTGTGAAAGTTGTGGATGGCAAGCCAATT
GTCCACATTGCGATGCGCATTTCACGTTGCACTTAAAGCCTTATCAGCATTTGCATTGTCATCATTGTGGCACGATCAAT
CGCATGCCTGATGCTTGTCCAAGTTGTAATCAAACCCAGCTTAAACCGATTGGCATGGGTACTGCAAAAGTTGAAGAAAC
CTTAAATGAATTATTTCCGAATTTTCCAGTGTTACGTGTAGACCGTGATTCCACCAGTCGTGTCGGCAGTTGGCAAAAAA
TTTATGATCAAATTCAAAAGAGTGAACCAACGATTTTACTGGGTACACAAATGCTGGCGAAGGGTCATCATTTCCCTTAT
GTCACTTTAGTGGCGATTTTAGATATTGATGCAGGTTTGCTGAGTGTGGATTTTCGTGCGACAGAACGAACCGCACAATT
GATTATTCAAGTAGCTGGTCGTGCAGGTCGTGGTGAGAAAAAAGGCGAAGTTTATTTACAAACTTTGCGTCCCGATCATC
CTCTATTAAATACACTCATTGATAAAGATTATCGTGCTTTTGCAAAGCAGACTTTGAAAGATCGTCAAGCGGCCTTAATG
CCACCTTGTCGTTATGCCATCATGATCCGTTGTGAATCTAAACATCAGGAAGAAAATTTAAAATTTCTCACTGAAATGAC
GCAGTTACTTCGCCAAAATTCAGAGGAAAATTTAATTGATATTTGGGGGCCTATTCCTGCGCCGATGGAACGTAAAGCTG
GACGTTATCAATCGCATGTTGTTTTGCTTTCACAAGATCGCGCCAAGATGCATTTCTATGTACGTCAATGGTGGGCTAAT
CTTTTACACAGTAAGCCATCTTCGATGAAAGTGACGATTGATGTTGATCCACAGGAGTTGAGTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.432

99.865

0.723

Multiple sequence alignment