Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BEN71_RS01975 Genome accession   NZ_CP031716
Coordinates   281279..282847 (-) Length   522 a.a.
NCBI ID   WP_068973874.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 276279..287847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS01960 (BEN71_01960) gpmI 277031..278578 (+) 1548 WP_068973877.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BEN71_RS01965 (BEN71_01965) - 278604..279773 (+) 1170 WP_068973876.1 S41 family peptidase -
  BEN71_RS01970 (BEN71_01970) pilR 279833..281251 (-) 1419 WP_068973875.1 sigma-54 dependent transcriptional regulator Regulator
  BEN71_RS01975 (BEN71_01975) pilS 281279..282847 (-) 1569 WP_068973874.1 PAS domain-containing sensor histidine kinase Regulator
  BEN71_RS01980 (BEN71_01980) - 282885..283520 (-) 636 WP_068973873.1 response regulator -
  BEN71_RS01985 (BEN71_01985) pbpG 283754..284809 (+) 1056 WP_068973872.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BEN71_RS01990 (BEN71_01990) thrC 285149..286288 (-) 1140 WP_068973871.1 threonine synthase -
  BEN71_RS01995 (BEN71_01995) - 286347..287651 (-) 1305 WP_068973870.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59686.31 Da        Isoelectric Point: 5.7898

>NTDB_id=310669 BEN71_RS01975 WP_068973874.1 281279..282847(-) (pilS) [Acinetobacter wuhouensis strain WCHA60]
MAPKVSVPIYQTIYRLGSLYSVYRVVIAFCLIVIFLISLENQQTHYLYPSLYFYSIAAFTVISALQMMLLRFFPHGISKQ
FIGFFIIDVPFLSLLVFALSGPNLSISILFVITIFSANFLLSKNQALFITLISVIAIIYQQFLGSFFDFSNLNNISNSAL
LAFLFFIVYGIGQIAIKRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYVVIDDKFKIVVSNPAACQLLGISPLYAYE
QYYLSEFQSDLYEILKDAMIRDEERFQFESHQSTYTVDIRIQKLVVPHQALTLLVLEDAQRINQKVQQLKLASLGQLSAS
IAHEIRNPLAAIVQANELYLGSDPEQQTLLHQMISKQAVRINAIIKDTLDMAKNKKVDARRINLSEFIHDLLASDLNDAQ
EKIKVEIEAETRVYFDDLQLRQVLINLIRNALRHNDEHAEFILIQAYHTQSHVCIDVIDYGNGVTEQNISKLFTPFYSTE
ITGTGLGLYLSQTICEANQAKLMYIEQKQQGACFRIECPLID

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=310669 BEN71_RS01975 WP_068973874.1 281279..282847(-) (pilS) [Acinetobacter wuhouensis strain WCHA60]
ATGGCGCCTAAGGTATCTGTCCCGATTTATCAAACCATTTACCGACTAGGCTCACTGTATTCAGTCTACCGTGTGGTCAT
CGCATTCTGCCTGATTGTTATTTTTTTAATTTCACTGGAAAATCAGCAAACTCATTACCTTTATCCAAGTCTATATTTTT
ATTCGATTGCAGCATTTACTGTTATTTCAGCCTTACAAATGATGCTTCTCAGATTCTTTCCACATGGAATCAGTAAGCAA
TTCATCGGCTTTTTTATCATCGATGTTCCTTTTCTGAGTCTTCTGGTTTTTGCATTAAGCGGTCCTAATCTTTCGATTAG
TATTTTATTTGTGATTACCATCTTCTCTGCAAATTTTTTGCTCAGTAAAAATCAAGCCTTATTTATTACGCTCATCTCCG
TGATTGCGATTATTTATCAGCAGTTTCTCGGTAGTTTTTTTGATTTTTCTAATTTAAATAATATTAGTAATAGTGCTTTA
TTGGCATTTCTATTTTTTATTGTTTATGGCATCGGGCAAATCGCCATTAAACGCTTTCAGGTTTTAGAGTCGCTTAATAC
TTACCAATCCTTAGAGTTATTTAAATTACAAAACATTAACCGCTATATTTTAGAACAGATCGAAGTAGGCTATGTTGTGA
TCGATGATAAATTCAAAATCGTCGTGAGCAATCCAGCAGCTTGTCAACTTTTGGGTATTTCACCACTTTATGCCTACGAA
CAATATTATTTATCGGAGTTTCAATCTGATTTATATGAAATCTTAAAAGACGCAATGATTCGTGATGAAGAACGTTTCCA
GTTTGAATCACATCAATCTACCTATACAGTCGATATTCGTATTCAAAAACTGGTTGTTCCTCATCAAGCCCTCACGCTTT
TAGTCCTCGAAGATGCTCAACGCATCAATCAAAAAGTACAACAACTCAAACTTGCCTCACTCGGGCAACTTTCTGCCAGT
ATTGCACATGAAATTCGTAATCCCTTGGCGGCAATCGTCCAAGCCAATGAGCTCTATTTAGGTAGTGACCCTGAGCAACA
AACACTGCTTCATCAGATGATTAGCAAACAAGCGGTGCGTATCAATGCCATCATTAAAGACACATTAGATATGGCAAAAA
ATAAAAAGGTCGATGCCAGAAGAATAAATCTATCTGAATTTATCCATGACTTATTAGCAAGTGACTTAAATGATGCTCAA
GAGAAAATTAAAGTCGAAATCGAAGCTGAAACTCGTGTTTACTTTGACGATCTGCAACTACGGCAAGTTTTGATTAATTT
GATTCGAAATGCGTTACGTCATAATGATGAGCATGCTGAATTCATTTTAATACAGGCATACCATACTCAATCTCACGTCT
GTATCGATGTGATTGATTATGGGAATGGCGTCACAGAACAAAATATTTCTAAATTATTTACACCATTTTATAGTACCGAA
ATTACTGGAACTGGTTTAGGATTATACCTATCGCAAACGATCTGCGAAGCAAATCAAGCGAAATTAATGTATATAGAGCA
AAAACAACAAGGGGCATGTTTCCGGATTGAATGCCCGCTCATAGATTAA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-282)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-520)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

54.688

98.084

0.536

Multiple sequence alignment