Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   BEN71_RS01695 Genome accession   NZ_CP031716
Coordinates   218062..218388 (+) Length   108 a.a.
NCBI ID   WP_068972945.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 213062..223388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS01670 (BEN71_01670) hemC 213661..214584 (+) 924 WP_193925004.1 hydroxymethylbilane synthase -
  BEN71_RS01675 (BEN71_01675) - 214598..215377 (+) 780 WP_068972948.1 uroporphyrinogen-III synthase -
  BEN71_RS01680 (BEN71_01680) - 215374..216207 (+) 834 WP_068972947.1 hypothetical protein -
  BEN71_RS01685 (BEN71_01685) - 216212..217405 (+) 1194 WP_068972946.1 hypothetical protein -
  BEN71_RS01690 (BEN71_01690) - 217413..217847 (+) 435 WP_068973041.1 thioesterase family protein -
  BEN71_RS01695 (BEN71_01695) hns 218062..218388 (+) 327 WP_068972945.1 H-NS family nucleoid-associated regulatory protein Regulator
  BEN71_RS01700 (BEN71_01700) gspN 218553..219296 (+) 744 WP_068972944.1 type II secretion system protein N -
  BEN71_RS01705 (BEN71_01705) - 219296..220159 (+) 864 WP_068972943.1 type II secretion system protein N -
  BEN71_RS01710 (BEN71_01710) gspD 220201..222474 (+) 2274 WP_068972942.1 type II secretion system secretin GspD -
  BEN71_RS01715 (BEN71_01715) - 222618..223337 (+) 720 WP_068972941.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12353.10 Da        Isoelectric Point: 8.4122

>NTDB_id=310667 BEN71_RS01695 WP_068972945.1 218062..218388(+) (hns) [Acinetobacter wuhouensis strain WCHA60]
MMPDISNLSVEELRKLTAEAEALIESKKDQAVEDAYNQIIKIAESAGLTLEQFIEYGSQKRKKTTRKVVEPRYRNKNNAA
DTWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=310667 BEN71_RS01695 WP_068972945.1 218062..218388(+) (hns) [Acinetobacter wuhouensis strain WCHA60]
ATGATGCCTGATATTAGTAATTTATCGGTCGAAGAGTTAAGGAAATTAACAGCTGAAGCAGAAGCATTAATTGAATCTAA
AAAAGATCAAGCTGTTGAAGACGCATATAATCAAATTATTAAAATTGCAGAGTCTGCTGGTTTGACTTTAGAGCAGTTCA
TTGAGTATGGCTCGCAAAAACGCAAAAAAACGACGCGTAAAGTTGTAGAGCCACGTTACCGTAATAAAAATAACGCTGCA
GATACTTGGACGGGTCGTGGTAAACAACCACGCTGGTTAGTTGCAGAAATTGAAAAAGGTGCAAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.556

100

0.806

Multiple sequence alignment