Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D0T88_RS07835 Genome accession   NZ_CP031706
Coordinates   1665335..1665964 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain R1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660335..1670964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T88_RS07815 (D0T88_08470) ycbZ 1660724..1662484 (-) 1761 WP_187172664.1 Lon protease family protein -
  D0T88_RS07820 (D0T88_08475) matP 1662670..1663122 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D0T88_RS07825 (D0T88_08480) ompA 1663198..1664250 (-) 1053 WP_137588952.1 porin OmpA -
  D0T88_RS07830 (D0T88_08490) sulA 1664607..1665116 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  D0T88_RS07835 (D0T88_08495) sxy/tfoX 1665335..1665964 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D0T88_RS07840 (D0T88_08500) yccS 1665927..1668089 (-) 2163 WP_000875015.1 YccS family putative transporter -
  D0T88_RS07845 (D0T88_08505) yccF 1668099..1668545 (-) 447 WP_001261235.1 YccF domain-containing protein -
  D0T88_RS07850 (D0T88_08510) helD 1668668..1670722 (+) 2055 WP_187172668.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=310648 D0T88_RS07835 WP_000839153.1 1665335..1665964(+) (sxy/tfoX) [Escherichia coli strain R1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=310648 D0T88_RS07835 WP_000839153.1 1665335..1665964(+) (sxy/tfoX) [Escherichia coli strain R1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment