Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   D0B54_RS20755 Genome accession   NZ_CP031704
Coordinates   4596849..4597772 (+) Length   307 a.a.
NCBI ID   WP_117293746.1    Uniprot ID   A0A346N5X3
Organism   Solimonas sp. K1W22B-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4591849..4602772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS20735 (D0B54_20735) - 4592104..4592868 (+) 765 WP_117293740.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  D0B54_RS20740 (D0B54_20740) thiE 4592865..4593512 (+) 648 WP_240433477.1 thiamine phosphate synthase -
  D0B54_RS20745 (D0B54_20745) hemL 4593577..4594860 (+) 1284 WP_117293742.1 glutamate-1-semialdehyde 2,1-aminomutase -
  D0B54_RS20750 (D0B54_20750) - 4594864..4596834 (+) 1971 WP_117293744.1 VTT domain-containing protein -
  D0B54_RS20755 (D0B54_20755) pilA 4596849..4597772 (+) 924 WP_117293746.1 signal recognition particle-docking protein FtsY Machinery gene
  D0B54_RS20760 (D0B54_20760) ftsE 4597810..4598538 (+) 729 WP_117293748.1 cell division ATP-binding protein FtsE -
  D0B54_RS20765 (D0B54_20765) ftsX 4598528..4599481 (+) 954 WP_240433478.1 permease-like cell division protein FtsX -
  D0B54_RS20770 (D0B54_20770) rpoH 4599643..4600467 (+) 825 WP_240433657.1 RNA polymerase sigma factor RpoH -
  D0B54_RS20775 (D0B54_20775) - 4600539..4601216 (+) 678 WP_205527198.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  D0B54_RS20780 (D0B54_20780) - 4601213..4601656 (+) 444 WP_117293754.1 CoA-binding protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 33001.20 Da        Isoelectric Point: 6.9979

>NTDB_id=310641 D0B54_RS20755 WP_117293746.1 4596849..4597772(+) (pilA) [Solimonas sp. K1W22B-7]
MSNESAIGRFRARLNKGDSWLTRDIGSLFKADALTPDALEELETRLLMADAGVEATQWLLERLQVDINLGRIKNAKQLRA
SLKAALVELLAPIAKPLQVPPFIKPYILFVAGVNGVGKTTTIGKLALRFKNEGKSVMLAAGDTFRAAAVQQLETWAKRVD
VPILSQGEGADSASVIFDAVQSAKARGIDVVIADTAGRLHTQSHLMEELRKIKRVLQKHDPYAPHEVLLVVDATTGGNAL
TQAIQFHEAIGLTGIAITKLDGTAKGGILLAIARRMALPVRFVGLGEAAEDLEPFDAEAYAEALIGE

Nucleotide


Download         Length: 924 bp        

>NTDB_id=310641 D0B54_RS20755 WP_117293746.1 4596849..4597772(+) (pilA) [Solimonas sp. K1W22B-7]
ATGTCCAACGAATCCGCCATCGGCCGCTTCCGCGCACGCCTCAACAAGGGCGACTCCTGGCTGACGCGCGACATCGGCAG
CCTGTTCAAGGCCGACGCCCTGACGCCGGACGCGCTGGAAGAACTGGAGACGCGCCTGCTGATGGCCGACGCCGGCGTCG
AGGCCACGCAGTGGCTGCTGGAACGCCTGCAGGTCGACATCAACCTCGGCCGCATCAAGAACGCCAAACAGCTGCGCGCC
TCGCTGAAAGCGGCCCTGGTGGAGCTGCTGGCGCCCATCGCCAAGCCGCTGCAGGTCCCGCCCTTCATCAAGCCCTACAT
CCTGTTCGTGGCCGGCGTGAACGGCGTCGGCAAGACCACCACCATCGGCAAGCTGGCGCTGCGCTTCAAGAACGAGGGCA
AGAGCGTGATGCTGGCCGCGGGCGACACCTTCCGCGCCGCCGCGGTGCAGCAGCTCGAGACCTGGGCGAAGCGCGTGGAC
GTGCCGATCCTGTCGCAGGGCGAGGGCGCCGACTCGGCCAGCGTGATCTTCGACGCCGTGCAGTCGGCCAAGGCCAGGGG
GATCGACGTGGTGATCGCCGACACCGCCGGGCGCCTGCACACGCAGAGCCACCTGATGGAGGAGCTGCGCAAGATCAAGC
GCGTGCTGCAGAAGCACGACCCCTACGCCCCGCACGAAGTGCTGCTGGTGGTGGACGCCACCACCGGCGGCAACGCCCTG
ACCCAGGCGATCCAGTTCCACGAGGCGATCGGCCTGACCGGCATCGCGATCACCAAGTTGGACGGCACCGCGAAGGGCGG
TATCCTGCTGGCGATCGCGCGGCGCATGGCCCTGCCGGTCCGCTTCGTCGGCCTCGGCGAGGCGGCCGAGGACCTGGAGC
CCTTCGACGCCGAGGCTTACGCGGAAGCCCTGATCGGCGAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(21-86)

SRP54-type protein, GTPase domain (SRP54)

(107-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346N5X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.852

96.743

0.502

Multiple sequence alignment