Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D0B54_RS13650 Genome accession   NZ_CP031704
Coordinates   2999400..3000761 (-) Length   453 a.a.
NCBI ID   WP_117291851.1    Uniprot ID   A0A346N273
Organism   Solimonas sp. K1W22B-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2994400..3005761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS13630 (D0B54_13630) ffh 2994767..2996131 (-) 1365 WP_117291847.1 signal recognition particle protein -
  D0B54_RS13635 (D0B54_13635) - 2996232..2996999 (-) 768 WP_117291848.1 MBL fold metallo-hydrolase -
  D0B54_RS13640 (D0B54_13640) - 2997111..2997911 (+) 801 WP_117291849.1 inner membrane protein YpjD -
  D0B54_RS13645 (D0B54_13645) - 2998000..2999274 (+) 1275 WP_117291850.1 HlyC/CorC family transporter -
  D0B54_RS13650 (D0B54_13650) radA 2999400..3000761 (-) 1362 WP_117291851.1 DNA repair protein RadA Machinery gene
  D0B54_RS13655 (D0B54_13655) - 3000849..3003524 (+) 2676 WP_117291852.1 CHASE2 domain-containing serine/threonine-protein kinase -
  D0B54_RS13660 (D0B54_13660) - 3003534..3004355 (+) 822 WP_117291853.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  D0B54_RS13665 (D0B54_13665) - 3004363..3005115 (+) 753 WP_117291854.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48494.83 Da        Isoelectric Point: 8.0925

>NTDB_id=310627 D0B54_RS13650 WP_117291851.1 2999400..3000761(-) (radA) [Solimonas sp. K1W22B-7]
MGTRTKTQYVCQSCGSASPKWVGQCPDCSAWNTLVEARVEASAKSRGGGISGTAGGRVQSLREIDMRETPRTTTGLSEMD
RVLGGGIVPGAVILIGGDPGIGKSTLLLQVLASVQPHLKTLYVTGEESLTQVHLRARRLGLPELDLPVLAETGVEEILAQ
IARHRPGLVVIDSIQTLYTDSLDSAPGSVSQLRECAAQLVRYAKASHTAVILVGHVTKEGAIAGPRVLEHMVDSVLYFEH
DPGSRFRIIRAVKNRFGAVNELGVFAMTDDGLKEVSNPSALFLSRHEQPVPGSVVTVTRQGTRPLLVEVQALVDRSMAGN
PRRVTLGLEGNRLNMLLAVLHRHGGIPLADQDVFANVVGGMRIQEPAADLPLVLAVLSSFRNRPMPNDLIVFGELGLAGE
VRPVAGGEERLAEAAKHGFRRAIVPEANKPRKTVKLDIEVIPVSRLDQAIDAS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=310627 D0B54_RS13650 WP_117291851.1 2999400..3000761(-) (radA) [Solimonas sp. K1W22B-7]
ATGGGTACCAGAACGAAAACACAGTACGTCTGCCAGTCCTGTGGCAGCGCCAGCCCCAAGTGGGTCGGCCAGTGTCCCGA
CTGCAGCGCCTGGAACACGCTGGTCGAGGCGCGCGTGGAGGCCTCGGCCAAGTCCCGCGGCGGCGGCATCAGCGGTACCG
CCGGCGGCCGGGTGCAGTCCCTGCGCGAGATCGACATGCGCGAGACGCCGCGCACCACCACTGGCCTGTCGGAGATGGAC
CGTGTGCTCGGCGGCGGCATCGTCCCCGGCGCGGTGATCCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACCCTGCT
GCTGCAGGTGCTGGCCAGCGTGCAGCCGCACCTGAAGACCCTGTACGTCACCGGCGAAGAGTCGCTGACCCAGGTCCACC
TGCGCGCGCGCCGGCTGGGCCTGCCGGAGCTGGACCTGCCGGTGCTGGCCGAGACCGGGGTGGAGGAGATCCTGGCCCAG
ATTGCCCGGCACCGCCCGGGACTGGTGGTGATCGATTCGATCCAGACGCTGTATACCGATTCGCTCGACTCGGCGCCGGG
CTCGGTGTCGCAGCTGCGCGAGTGCGCGGCGCAGCTGGTGCGCTACGCCAAGGCCAGCCATACCGCGGTGATCCTGGTGG
GCCACGTCACCAAGGAAGGCGCCATCGCCGGCCCGCGCGTGCTCGAACACATGGTCGACTCGGTGCTGTACTTCGAGCAC
GACCCCGGCTCGCGCTTCCGCATCATCCGCGCGGTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTTGCCAT
GACCGACGATGGCCTGAAGGAGGTCAGCAATCCTTCGGCGCTGTTCCTGTCGCGCCACGAGCAGCCGGTGCCGGGCAGCG
TGGTGACGGTGACGCGGCAGGGCACCCGGCCGCTGCTGGTGGAGGTACAGGCCCTGGTCGACCGCTCCATGGCCGGCAAT
CCGCGCCGCGTGACCCTGGGCCTGGAGGGCAACCGCCTGAACATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCATTCC
GCTGGCCGACCAGGACGTGTTCGCCAACGTGGTCGGCGGCATGCGCATCCAGGAGCCGGCGGCGGACCTGCCGCTGGTGC
TGGCGGTGCTCTCTTCCTTCCGCAACCGGCCGATGCCCAATGACCTGATCGTGTTCGGCGAGCTGGGTCTGGCGGGCGAG
GTGCGGCCGGTGGCGGGTGGCGAGGAGCGCCTGGCCGAGGCGGCCAAGCACGGGTTCCGCCGCGCGATCGTTCCGGAGGC
GAACAAGCCGCGCAAGACGGTGAAGCTGGATATCGAGGTGATTCCGGTGTCGCGGCTGGATCAGGCGATCGACGCGTCCT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346N273

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.782

100

0.503
  radA Streptococcus pneumoniae Rx1

45.414

98.675

0.448
  radA Streptococcus pneumoniae D39

45.414

98.675

0.448
  radA Streptococcus pneumoniae R6

45.414

98.675

0.448
  radA Streptococcus pneumoniae TIGR4

45.414

98.675

0.448
  radA Streptococcus mitis SK321

45.414

98.675

0.448
  radA Streptococcus mitis NCTC 12261

45.19

98.675

0.446

Multiple sequence alignment