Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D0Y49_RS07545 Genome accession   NZ_CP031701
Coordinates   1519067..1520875 (-) Length   602 a.a.
NCBI ID   WP_117285873.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain IDCC9203     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1514067..1525875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y49_RS07520 (D0Y49_07520) - 1514442..1515101 (+) 660 WP_117285870.1 metal ABC transporter ATP-binding protein -
  D0Y49_RS07525 (D0Y49_07525) - 1515101..1515892 (+) 792 WP_117285871.1 metal ABC transporter permease -
  D0Y49_RS07530 (D0Y49_07530) - 1516014..1517525 (+) 1512 WP_162879032.1 L-lactate permease -
  D0Y49_RS07535 (D0Y49_07535) - 1517594..1518121 (+) 528 WP_117285593.1 helix-turn-helix domain-containing protein -
  D0Y49_RS07540 (D0Y49_07540) - 1518106..1518984 (+) 879 WP_338121185.1 IS3 family transposase -
  D0Y49_RS07545 (D0Y49_07545) pepF 1519067..1520875 (-) 1809 WP_117285873.1 oligoendopeptidase F Regulator
  D0Y49_RS07550 (D0Y49_07550) - 1521039..1522163 (+) 1125 WP_117285874.1 LCP family protein -
  D0Y49_RS07555 (D0Y49_07555) - 1522268..1522540 (-) 273 WP_004896551.1 hypothetical protein -
  D0Y49_RS07560 (D0Y49_07560) - 1522765..1523148 (+) 384 WP_117285875.1 hypothetical protein -
  D0Y49_RS07565 (D0Y49_07565) - 1523148..1524695 (+) 1548 WP_117285876.1 ABC-F family ATP-binding cassette domain-containing protein -
  D0Y49_RS07570 (D0Y49_07570) - 1524712..1525494 (+) 783 WP_117285877.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68577.28 Da        Isoelectric Point: 4.5829

>NTDB_id=310579 D0Y49_RS07545 WP_117285873.1 1519067..1520875(-) (pepF) [Lactobacillus johnsonii strain IDCC9203]
MALPTRNEVSDDLKWDLSRVFKDDQEWDQEYNQVAIEIKNLDRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQKYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDKERTAYINFLKAGSSDY
PTEIMKHAGVDMTKADYLKDAFNTFEKQLNEFEKIVNELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=310579 D0Y49_RS07545 WP_117285873.1 1519067..1520875(-) (pepF) [Lactobacillus johnsonii strain IDCC9203]
ATGGCTCTTCCAACAAGAAATGAGGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGATCAAGAATATAATCAGGTCGCAATCGAAATTAAAAATTTAGATAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAAGGAATTACAGAAATTTTATCTGTAAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAAATGAGTGCTGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAGACACTTGCTAAATTTATGCAAGATGAACCTCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCAGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATATGGCTATGTTCAAGA
TGAAGATGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCCCAAGATAGAAATGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGTCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATATAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAACGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTACATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAGGGTA
CACTTTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCCGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTACGGCAATTTAAACCAAAAATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCATTTCTATTACAACTTTTATGTTTACCAATATGCAACAGGCTTTGCTGCTGCTACAGCTC
TTGCAAATAATGTTGTTCATGGTACTGACAAAGAACGTACCGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAACATGCCGGTGTCGATATGACAAAGGCCGATTACTTAAAAGACGCATTTAATACTTTTGAAAA
ACAACTTAATGAGTTTGAAAAAATCGTTAATGAATTGAAAACAATTTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.339

0.505

Multiple sequence alignment