Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D0Y49_RS04835 Genome accession   NZ_CP031701
Coordinates   947241..948620 (-) Length   459 a.a.
NCBI ID   WP_117285753.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain IDCC9203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 942241..953620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y49_RS04815 (D0Y49_04815) rlmB 942980..943735 (-) 756 WP_004895769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  D0Y49_RS04820 (D0Y49_04820) - 943722..944165 (-) 444 WP_117285750.1 Mini-ribonuclease 3 -
  D0Y49_RS04825 (D0Y49_04825) cysS 944158..945570 (-) 1413 WP_162879030.1 cysteine--tRNA ligase -
  D0Y49_RS04830 (D0Y49_04830) gltX 945660..947159 (-) 1500 WP_117285752.1 glutamate--tRNA ligase -
  D0Y49_RS04835 (D0Y49_04835) radA 947241..948620 (-) 1380 WP_117285753.1 DNA repair protein RadA Machinery gene
  D0Y49_RS04840 (D0Y49_04840) - 948620..949171 (-) 552 WP_004895781.1 dUTP diphosphatase -
  D0Y49_RS09915 - 949289..949636 (-) 348 WP_232457462.1 hypothetical protein -
  D0Y49_RS04845 (D0Y49_04845) - 949633..950322 (-) 690 WP_240326209.1 LCP family protein -
  D0Y49_RS04850 (D0Y49_04850) pepC 950520..951869 (+) 1350 WP_117285754.1 aminopeptidase C -
  D0Y49_RS09710 (D0Y49_04855) - 952095..953132 (+) 1038 Protein_963 amino acid permease -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50128.69 Da        Isoelectric Point: 7.3272

>NTDB_id=310573 D0Y49_RS04835 WP_117285753.1 947241..948620(-) (radA) [Lactobacillus johnsonii strain IDCC9203]
MAKVKTRYKCRNCGYISASYLGRCPHCGAWNQFEEETQEIKKVSTKATASRLMTKIGNNDPVKLTEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALAKEHSVLYVSGEESASQIKMRADRLGVSDSGILLYPETNMQNI
RDQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNEQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLAEVSNPSAIFLDERLPNSTGSSVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEVGL
TGEIRRVNQIEARVKEAAKVGFKRIFIPKNNLNQDLKNNSEIEVIGVASLPQALKLVFN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=310573 D0Y49_RS04835 WP_117285753.1 947241..948620(-) (radA) [Lactobacillus johnsonii strain IDCC9203]
ATGGCAAAAGTTAAAACTCGTTATAAGTGTCGTAATTGTGGATATATTTCTGCTTCCTATCTTGGGAGATGTCCCCATTG
TGGTGCTTGGAATCAATTTGAAGAAGAGACACAGGAAATTAAAAAAGTATCAACTAAGGCAACTGCAAGCCGGTTGATGA
CTAAAATTGGAAATAATGATCCAGTAAAGTTAACTGAAGTAAAAGCTGAGAAAGAAAAAAGAATTGTGACTCCTTTTGAA
GAATTAAATCGAGTTTTAGGAGGAGGGATTGTTCCAGGATCTTTAGTTTTAATTGGAGGAGATCCAGGAATTGGAAAATC
AACCTTAATGCTTCAAATTACTGGTGCTTTAGCTAAAGAACATAGCGTCTTATATGTTTCAGGAGAAGAGTCTGCGAGTC
AAATAAAGATGCGAGCAGATCGACTAGGAGTAAGCGATAGCGGAATTTTGCTTTATCCAGAAACAAATATGCAGAATATT
CGTGACCAGATTGATGAAATTAAGCCAGATTTTTTGGTAATTGACTCTATTCAAACAATGAACGAACCTTCACTTGATTC
AATGGTTGGATCTGCTTCTCAAGTACGTGAAGTAACAAGTGAATTAATGAAAATTGCTAAAAATGAACAAATAACTACTT
TTGTTATTGGGCATGTAACTAAAGAAGGAGCAATTGCTGGTCCCAAGATTATGGAACATATGGTTGATACCGTCCTTTAC
TTTGAAGGAGATGGGCACCACTCATATCGAATTTTAAGATCAGTCAAGAATCGTTTTGGCGCAGCTAATGAAATTGGAAT
GTTTGAGATGAAAAATGAAGGGTTAGCAGAAGTAAGTAATCCTTCAGCTATTTTCTTAGACGAACGCTTACCTAATTCGA
CTGGATCTTCAGTTGTCGTTTCACTTGAAGGAACGCGGCCGCTTCTTGCGGATATCCAAGCTTTAGTAACCCCAACAGCA
TTCGGATATGCAAAAAGAACAACTTCAGGATTAGATTTTAATCGAGTAGCACTTTTATTGGCAGTTTTAGAAAAAAGAGG
CAACTTAATGCTTCAAAATCAAGATGCTTTTCTAACTGCAACTGGTGGGATTAAATTAAATGAACCAGCAATTGATCTTG
CAATTTGTATGGCGGTTGCTTCAAGTTACAAAAATAAAGAAATTTCTTCGACTGATTGCTTTGTAGGTGAAGTTGGCTTA
ACTGGTGAAATTAGAAGAGTTAATCAAATTGAAGCTAGAGTTAAAGAGGCTGCAAAAGTAGGCTTTAAGAGGATTTTTAT
CCCTAAAAACAACTTAAACCAGGACCTTAAGAATAACTCTGAGATCGAAGTAATTGGAGTAGCAAGTTTACCACAAGCTT
TAAAACTTGTTTTTAACTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

60.262

99.782

0.601
  radA Streptococcus pneumoniae Rx1

60.262

99.782

0.601
  radA Streptococcus pneumoniae D39

60.262

99.782

0.601
  radA Streptococcus pneumoniae R6

60.262

99.782

0.601
  radA Streptococcus pneumoniae TIGR4

60.262

99.782

0.601
  radA Streptococcus mitis SK321

60.262

99.782

0.601
  radA Bacillus subtilis subsp. subtilis str. 168

55.921

99.346

0.556

Multiple sequence alignment