Detailed information NTG0310556

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: D0T92_RS07035
• Genome accession: NZ_CP031700
• Coordinates: 1523438..1524817 (+)
• Length: 459 a.a.
• NCBI ID: WP_151051495.1
• Uniprot ID: A0A5J6PZT4
• Organism: Neisseria zalophi strain ATCC BAA-2455
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1522267..1523274	1523438..1524817	flank	164

Gene organization within MGE regions

Location: 1522267..1524817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0T92_RS07030 (D0T92_07080)	-	1522267..1523274 (-)	1008	WP_151051493.1	IS5 family transposase	-
D0T92_RS07035 (D0T92_07085)	radA	1523438..1524817 (+)	1380	WP_151051495.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49401.79 Da
• Isoelectric Point: 6.7569

>NTDB_id=310556 D0T92_RS07035 WP_151051495.1 1523438..1524817(+) (radA) [Neisseria zalophi strain ATCC BAA-2455]
MAKASKTVYQCSECGGTTPKWQGKCPHCGEWNTLQESLAAPEPKNTRFQSWAADSARVQALSEVTAIEVPRQPTGINELD
RVLGGGLVNGAVILLGGDPGIGKSTLLLQTIAMMAADRKVLYVSGEESAQQVALRAQRLGLQSDGVDLLAEIRIEAIQTA
LKQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPHANLPRNRKDFPGLQIDGVSSLQEAVEICRNGDG

Nucleotide

• Length: 1380 bp

>NTDB_id=310556 D0T92_RS07035 WP_151051495.1 1523438..1524817(+) (radA) [Neisseria zalophi strain ATCC BAA-2455]
ATGGCAAAGGCATCAAAAACCGTTTATCAATGCAGCGAATGCGGCGGCACCACACCAAAATGGCAGGGGAAATGCCCGCA
TTGCGGCGAATGGAACACGCTTCAGGAAAGCCTTGCCGCACCCGAACCAAAAAATACCCGCTTCCAATCTTGGGCGGCCG
ACAGCGCCCGTGTTCAGGCGCTCTCTGAGGTAACGGCTATTGAAGTACCACGCCAACCGACCGGTATTAACGAGCTTGAC
CGTGTGCTCGGTGGCGGCTTGGTCAATGGAGCGGTGATTTTGCTGGGTGGCGATCCGGGTATCGGCAAATCGACATTGCT
GCTGCAAACCATCGCTATGATGGCGGCAGATCGCAAAGTGTTGTATGTCTCCGGTGAAGAATCGGCGCAACAAGTCGCCT
TGCGTGCACAACGGCTGGGCTTGCAAAGTGACGGCGTCGATTTATTGGCGGAGATCCGCATAGAAGCCATTCAGACGGCC
TTAAAACAGCATGAGCCTGCCGTGGTGGTGATTGATTCGATTCAGACCATGTATTCCGACCAAATCACATCGGCACCCGG
TTCGGTTTCACAAGTACGCGAATGTGCCGCCCAATTAACCCGCATGGCCAAACAAATGGGGATTGCCATGATTTTGGTCG
GCCATGTAACCAAAGATGGTGCGATTGCCGGCCCGCGCGTATTGGAGCATATGGTCGATACGGTTTTATATTTCGAGGGT
GACCAGCATTCCAACTACCGCATGATACGCGCCATAAAAAACCGTTTTGGTGCTGCCAACGAGTTGGGCGTATTCGCCAT
GACCGAACATGGCTTGAAAGGCGTATCCAACCCTTCGGCAATTTTTTTGGCCAGCTATCGCGACGACGTGCCCGGTTCCT
GCGTATTGGTGACACAAGAAGGCAGCAGGCCGTTATTGGTCGAGATTCAAGCCTTAGTGGATGATGCGCACGGCTTCACC
CCCAAAAGGCTGACGGTCGGGCTGGAACAAAACCGCTTGGCCATGCTCTTGGCCGTCTTAAACCGCCATGCCGGCATTGC
CTGCTTTGACCAAGATGTATTTTTAAACGCGGTCGGCGGCGTTAAAATCAACGAACCGGCTGCCGACTTAGCCATTATCC
TCGCCATGCTTTCCAGCTTCCGAAACCGCCCGTTGCCTGAAAAAATGGTCGCTTTCGGCGAAATCGGCCTTAGTGGCGAA
GTCCGCCCTGTCGCCCGCGGTCAGGAACGCTTAAAAGAAGCGGAAAAACTCGGCTTCAAACGTGCCATCGTGCCGCACGC
CAACCTGCCGCGCAACCGCAAAGATTTTCCGGGCTTGCAGATAGACGGGGTGAGCAGTCTGCAAGAGGCTGTTGAAATAT
GTCGGAATGGTGACGGATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (361-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• AAA domain (AAA_25) (74-220)

3D structure

• AlphaFold DB: A0A5J6PZT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.675	100	0.499
radA	Streptococcus mitis NCTC 12261	46.608	99.564	0.464
radA	Streptococcus pneumoniae Rx1	46.389	99.564	0.462
radA	Streptococcus pneumoniae D39	46.389	99.564	0.462
radA	Streptococcus pneumoniae R6	46.389	99.564	0.462
radA	Streptococcus pneumoniae TIGR4	46.389	99.564	0.462
radA	Streptococcus mitis SK321	46.681	98.475	0.46