Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   D0T92_RS05710 Genome accession   NZ_CP031700
Coordinates   1242188..1245823 (-) Length   1211 a.a.
NCBI ID   WP_151051049.1    Uniprot ID   -
Organism   Neisseria zalophi strain ATCC BAA-2455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1237188..1250823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T92_RS05690 (D0T92_05730) - 1237566..1239236 (-) 1671 WP_151051041.1 AMP-binding protein -
  D0T92_RS05695 (D0T92_05735) mnmA 1239352..1240452 (-) 1101 WP_151051043.1 tRNA 2-thiouridine(34) synthase MnmA -
  D0T92_RS05700 (D0T92_05740) panD 1240720..1241103 (+) 384 WP_151051045.1 aspartate 1-decarboxylase -
  D0T92_RS05705 (D0T92_05745) kdsA 1241196..1242038 (+) 843 WP_151051047.1 3-deoxy-8-phosphooctulonate synthase -
  D0T92_RS05710 (D0T92_05750) recB 1242188..1245823 (-) 3636 WP_151051049.1 exodeoxyribonuclease V subunit beta Machinery gene
  D0T92_RS05715 (D0T92_05755) - 1246034..1246636 (-) 603 WP_151051051.1 biliverdin-producing heme oxygenase -
  D0T92_RS05720 (D0T92_05760) - 1246721..1249201 (-) 2481 WP_151051053.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  D0T92_RS05725 (D0T92_05765) - 1249283..1250296 (-) 1014 WP_151051055.1 Slam-dependent surface lipoprotein -

Sequence

Protein


Download         Length: 1211 a.a.        Molecular weight: 136022.03 Da        Isoelectric Point: 5.7609

>NTDB_id=310552 D0T92_RS05710 WP_151051049.1 1242188..1245823(-) (recB) [Neisseria zalophi strain ATCC BAA-2455]
MQPFHPLNVPIQGTNLVEASAGTGKTYGIAALFTRLIVLEKMSVESVLVVTFTKAATAELKNRLRARLDNVLLALEKTDN
ASGSDGLREYCAKHHDGDVFLLELLQKALAQESRQRLIVRLKAAIGRFDNAAIYTIHGFCQRLLRDYAFLCQVPFDLTLS
EETHERMLIAAQDFWRQEVADSPLFAPLVFKHHETPQTALNHIRTFIGRPYLKFRRPEINLASEYQALQTIWQATRPKLA
EYAETFWRIHPALNGNSYRKNTFEKLFANLQKADAGDTIPSYHEKLPMLATQALTEKTKKGKAVNDEAYQSLNHLALLGE
AIQKYEQSEQDALTALHLDLLEYVRKALSEDKQNRRERSFDDLLLDVHHALTQNPKREQLAQAVAANWKTALIDEFQDTD
PLQYEIFSRLFIRQGNPLFLVGDPKQAIYSFRGADIYAYLQAARDADAHYTLDTNFRSHADLIHGIGAIFQQKNQPFVLN
GIGYTDVKANREAGRLNDTEAPIKIRWINQTDDDSANKNMLRQRAAAYCADEIAHALNEAAANRLTYRKNSNSDAVPIQS
GQIAVLVRTHNEGSMIAAALKKRRIQSVLLHRESVFASPEAEAIAALIGFWLQPQRTEPLRFVLSGVLFRQTATELYTLN
HDEAALLAWIASAQTAADIWQQSGVYAAMQYFSAQHSIETHLLAQHNERSLTNYHQIIERLAEEDEQSRSPAALHQWLLT
EIQTAHEGGAAGDSNLLRLESDENLVKIVTMHAAKGLQYPLVYCPFVWDAPARYNDSWQILHCNGDSELLAQHQRSDADN
DKIADENLSESLRLLYVALTRAEEQLVIYAGYCNDTRFNTFAYLLAGSSDTNRSQAEEIYAKAKKTGKAAAEMAELKTNW
QRFLETSPQAASFAFLETPPQAAVYTNGNISDGHYQALAIPPRSFELIRHTSFTGLSRHTLSHNDDAREELQPAIDAAES
GMADLPDFQTAEPADGNDIYHFPRGAEAGICLHEILENFDFAAPAAEQQEAVSHVLDRYGFDPIWLPAVENMLDHTRLTP
LGNGSQNSLAVIPPERRLAEMGFTLYLNDFPLKPLQAWFADARTGLSAACIQASQLLDFQDVKGFLNGFIDMTCQDSDGL
VTVIDYKSNHLGYNAADYTPEAMDEAVAHHHYYLQALIYAIAVARHFQSRGQPLPRISVRYLFLRGLDGSGNGIWSWDID
SDWLSAWVPSS

Nucleotide


Download         Length: 3636 bp        

>NTDB_id=310552 D0T92_RS05710 WP_151051049.1 1242188..1245823(-) (recB) [Neisseria zalophi strain ATCC BAA-2455]
ATGCAACCTTTCCATCCTCTCAATGTGCCCATTCAGGGCACCAATCTTGTGGAAGCCTCTGCCGGTACCGGTAAAACCTA
CGGTATTGCCGCATTATTCACCCGCCTGATTGTGCTGGAAAAAATGTCGGTAGAAAGCGTATTGGTCGTTACCTTTACCA
AAGCGGCGACCGCCGAATTGAAAAACCGTTTGCGGGCGCGTTTGGATAATGTTTTATTGGCATTGGAAAAAACAGATAAT
GCAAGCGGTTCAGACGGCCTGCGTGAGTATTGTGCCAAGCATCATGACGGCGATGTGTTTCTGCTTGAACTACTGCAAAA
AGCGTTGGCACAAGAAAGCCGGCAACGGCTGATTGTGCGCCTAAAAGCCGCCATCGGCAGGTTTGATAATGCCGCTATCT
ATACCATACACGGTTTCTGCCAAAGGCTGCTGCGCGATTATGCCTTTCTCTGCCAAGTGCCTTTTGATTTAACACTTTCC
GAAGAAACCCACGAACGTATGCTGATTGCCGCGCAAGATTTTTGGCGGCAGGAAGTTGCCGATAGCCCCTTATTCGCGCC
TTTGGTATTCAAACACCATGAAACGCCGCAAACCGCTTTAAACCATATCCGAACCTTTATCGGCCGCCCCTATCTCAAAT
TCAGACGGCCTGAAATCAATTTGGCTAGCGAATATCAGGCACTGCAAACCATTTGGCAAGCCACCCGACCCAAGCTGGCA
GAATATGCCGAAACCTTTTGGCGCATACACCCTGCTTTAAACGGCAACAGCTACCGCAAAAATACATTTGAAAAACTGTT
TGCCAACCTGCAAAAAGCCGACGCCGGCGATACGATACCGTCCTATCATGAAAAGCTACCCATGCTTGCCACTCAGGCCT
TAACCGAAAAAACCAAAAAGGGCAAAGCGGTTAACGATGAAGCATACCAAAGCTTAAACCATCTGGCGCTTTTAGGCGAA
GCCATTCAAAAATACGAACAAAGCGAGCAAGACGCGCTCACCGCACTTCATTTGGATTTGCTTGAATATGTGCGCAAAGC
ATTAAGCGAAGACAAACAAAACCGCCGCGAACGCAGCTTCGACGATTTATTATTGGATGTTCACCACGCCCTCACCCAAA
ACCCGAAACGCGAGCAATTGGCGCAAGCCGTTGCCGCCAATTGGAAAACCGCACTCATCGACGAATTCCAAGACACCGAC
CCGCTGCAATACGAAATTTTCAGCCGCCTGTTTATCCGGCAGGGCAATCCCCTGTTTTTGGTCGGCGACCCCAAACAGGC
GATTTACAGCTTTCGCGGTGCCGATATTTATGCCTATCTGCAAGCCGCCCGCGATGCCGACGCCCACTATACCCTTGACA
CCAACTTCCGCAGCCATGCCGATTTAATTCACGGTATCGGCGCCATATTCCAACAAAAAAACCAACCTTTCGTGTTAAAC
GGCATCGGCTATACCGATGTCAAAGCCAACCGTGAGGCAGGCCGTCTGAACGATACCGAAGCACCGATAAAGATACGCTG
GATTAATCAGACCGATGACGATTCCGCCAATAAAAATATGTTGCGCCAACGCGCCGCTGCCTATTGCGCCGACGAAATCG
CACACGCCCTCAACGAAGCGGCAGCCAACCGCCTGACCTATCGGAAAAACAGCAACAGCGACGCCGTACCGATTCAATCC
GGGCAGATTGCCGTATTGGTACGCACCCACAACGAAGGCAGTATGATTGCCGCCGCACTGAAAAAGCGCCGCATCCAAAG
CGTTTTGCTCCACCGCGAATCGGTTTTTGCTTCGCCCGAAGCCGAAGCCATAGCCGCCCTTATCGGTTTCTGGCTGCAAC
CGCAGCGTACCGAGCCTTTAAGATTTGTTCTCAGCGGCGTATTGTTCCGTCAAACCGCTACCGAACTGTATACCCTCAAC
CATGACGAAGCCGCCTTATTGGCATGGATAGCCTCCGCACAAACCGCCGCCGATATTTGGCAACAATCCGGCGTTTATGC
CGCCATGCAGTATTTTTCCGCACAACACAGCATTGAAACGCACCTATTGGCACAACACAACGAACGCAGCCTCACCAACT
ACCATCAAATCATCGAAAGGCTGGCGGAAGAAGACGAACAAAGCCGCAGCCCTGCCGCCCTACACCAATGGCTGCTCACA
GAAATTCAGACGGCACACGAAGGCGGTGCAGCGGGCGACAGCAACCTACTCAGATTGGAAAGCGATGAAAACCTCGTCAA
AATCGTAACCATGCACGCAGCCAAAGGTTTGCAATATCCGTTGGTTTATTGCCCGTTTGTGTGGGATGCCCCCGCCAGAT
ACAACGACAGCTGGCAAATTCTTCACTGCAACGGGGATAGCGAATTATTGGCCCAACACCAGCGCAGCGATGCCGACAAC
GACAAGATTGCCGATGAAAACCTCAGCGAAAGCCTACGCCTGCTTTATGTAGCGCTCACCCGCGCCGAAGAGCAACTGGT
TATCTATGCCGGCTATTGCAACGACACCCGTTTTAACACCTTCGCCTATCTGCTGGCCGGAAGCTCCGACACCAACCGCA
GTCAGGCCGAAGAAATTTATGCCAAAGCCAAAAAAACCGGCAAAGCCGCCGCCGAAATGGCCGAGCTCAAAACCAACTGG
CAGCGTTTTCTGGAAACATCGCCGCAAGCCGCAAGCTTTGCTTTTCTCGAAACACCGCCCCAAGCAGCCGTTTATACGAA
CGGCAATATTTCAGACGGCCATTATCAGGCACTCGCCATTCCGCCGCGTTCGTTCGAACTCATCCGCCACACCAGCTTTA
CCGGCCTGAGCCGCCACACCCTCAGCCACAACGACGACGCCCGCGAAGAGTTGCAACCGGCCATTGACGCCGCCGAAAGC
GGTATGGCGGATTTACCCGACTTTCAGACGGCCGAGCCGGCCGACGGCAACGATATCTATCATTTTCCACGCGGCGCCGA
AGCCGGCATCTGTTTGCATGAAATATTAGAAAACTTTGATTTCGCCGCGCCCGCCGCCGAGCAACAAGAAGCGGTTTCCC
ATGTACTCGACCGCTACGGCTTTGACCCAATATGGCTGCCCGCCGTGGAAAATATGCTCGACCATACCCGCCTCACCCCG
TTAGGTAACGGCAGTCAAAATAGCTTGGCCGTCATACCGCCCGAGCGCCGTTTGGCCGAAATGGGCTTTACATTATATTT
AAACGATTTCCCCCTCAAGCCCTTGCAGGCATGGTTTGCCGATGCCCGAACCGGCTTATCGGCAGCCTGTATCCAAGCTT
CGCAACTGCTCGATTTTCAAGATGTGAAAGGCTTCTTAAACGGCTTTATCGATATGACCTGCCAAGATTCAGACGGCCTC
GTTACCGTTATCGACTATAAATCCAACCATTTGGGTTACAACGCCGCCGACTACACCCCCGAAGCGATGGACGAAGCCGT
TGCCCACCACCATTATTATTTACAGGCACTCATTTACGCCATTGCCGTCGCCCGCCATTTCCAATCCCGCGGCCAACCCC
TGCCCCGCATTTCCGTGCGCTATCTGTTTTTGCGCGGATTAGACGGCAGCGGCAATGGCATTTGGTCTTGGGATATCGAT
AGCGATTGGCTGTCGGCATGGGTGCCGTCGTCGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(450-828)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1095-1184)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(11-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

55.904

100

0.559

Multiple sequence alignment