Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D0T90_RS10365 Genome accession   NZ_CP031699
Coordinates   2233856..2235232 (+) Length   458 a.a.
NCBI ID   WP_123795342.1    Uniprot ID   A0A5P3MTD7
Organism   Neisseria animalis strain ATCC 49930     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228856..2240232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T90_RS10345 (D0T90_10715) - 2228920..2229465 (-) 546 WP_123795338.1 CreA family protein -
  D0T90_RS10350 (D0T90_10720) - 2229649..2231376 (+) 1728 WP_123795339.1 peptidoglycan DD-metalloendopeptidase family protein -
  D0T90_RS10355 (D0T90_10725) - 2231528..2233018 (+) 1491 WP_123795340.1 S41 family peptidase -
  D0T90_RS10360 (D0T90_10730) - 2233130..2233792 (+) 663 WP_123795341.1 glutathione S-transferase -
  D0T90_RS10365 (D0T90_10735) radA 2233856..2235232 (+) 1377 WP_123795342.1 DNA repair protein RadA Machinery gene
  D0T90_RS10370 (D0T90_10745) - 2235564..2236445 (+) 882 WP_123795343.1 DMT family transporter -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49338.85 Da        Isoelectric Point: 6.9443

>NTDB_id=310532 D0T90_RS10365 WP_123795342.1 2233856..2235232(+) (radA) [Neisseria animalis strain ATCC 49930]
MAKAPKTVYQCTECGGTAPKWQGKCPHCGEWNTLQESLSAPEPKNARFQSWAADTSQVQSLASVTAAEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQTRKVLYVSGEESAQQVALRAQRLELPADGVNLLAEIRMEAIQTA
LKQHEPQVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGISMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNVREFPGLEIFGVSSLQEAVEICRHAE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=310532 D0T90_RS10365 WP_123795342.1 2233856..2235232(+) (radA) [Neisseria animalis strain ATCC 49930]
ATGGCCAAAGCACCCAAAACCGTTTACCAATGCACCGAATGCGGCGGCACCGCGCCGAAATGGCAGGGCAAGTGTCCGCA
TTGCGGCGAGTGGAACACCTTGCAGGAAAGCCTCTCCGCCCCCGAACCGAAAAACGCCAGATTCCAATCTTGGGCGGCGG
ATACCTCGCAAGTGCAGTCGCTGGCATCCGTTACCGCCGCCGAAGTGCCGCGCAATCCTACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGCTTGGTAGACGGCGCGGTGATTTTGCTCGGCGGCGACCCCGGTATCGGCAAATCCACACTGCT
GCTGCAAACCATTGCCAAAATGGCACAGACACGCAAGGTTTTATATGTATCGGGTGAGGAATCGGCACAACAAGTCGCCC
TGCGCGCCCAGCGTTTGGAATTGCCGGCCGATGGCGTAAACCTGTTGGCCGAAATCCGCATGGAAGCAATTCAGACGGCC
TTGAAGCAGCACGAACCGCAAGTGGTGGTTATCGACTCAATCCAGACCATGTATTCCGACCAGATTACTTCCGCCCCCGG
CTCGGTGTCGCAGGTACGAGAATGTGCGGCGCAGCTGACACGGATGGCGAAGCAAATGGGCATCTCCATGATTTTAGTCG
GCCACGTCACCAAAGACGGGGCGATTGCAGGCCCCCGCGTGTTGGAGCATATGGTCGATACCGTTTTGTATTTTGAAGGC
GACCAGCATTCCAACTACCGCATGATCCGCGCCATCAAAAACCGCTTCGGTGCGGCCAACGAATTGGGCGTATTCGCCAT
GACGGAACACGGCTTGAAAGGCGTATCCAATCCTTCGGCGATTTTTCTGGCCAGCTATCGGGACGACGTACCCGGTTCGT
GCGTCCTCGTTACCCAAGAGGGTTCGCGCCCGCTGCTGGTGGAAATCCAAGCATTGGTCGACGATGCCCACGGCTTTACC
CCCAAACGTCTGACCGTCGGTCTGGAGCAAAACCGCCTCGCCATGCTGCTGGCAGTGTTAAACCGGCACGGCGGCATTGC
CTGCTTCGATCAAGATGTGTTTCTCAACGCGGTCGGCGGTGTCAAAATCGGCGAACCGGCGGCAGATTTGGCGGTGATAC
TCGCCATGCTTTCCAGCTTCCGCAACCGTCCGCTGCCCGAAAAAATGGTGGCTTTCGGCGAAATCGGCTTGAGCGGCGAG
GTGCGCCCCGTCGCCCGCGGCCAAGAACGCTTGAAAGAGGCGGAAAAGCTCGGCTTCAAACGCGCCATCGTGCCGAAAGC
CAATATGCCGCGCAATGTCCGGGAATTTCCGGGTTTGGAGATTTTCGGGGTATCGAGTTTGCAGGAAGCGGTTGAAATCT
GCCGTCATGCCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MTD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

99.127

0.489
  radA Streptococcus mitis NCTC 12261

47.124

98.69

0.465
  radA Streptococcus mitis SK321

46.903

98.69

0.463
  radA Streptococcus pneumoniae TIGR4

46.389

99.782

0.463
  radA Streptococcus pneumoniae D39

46.389

99.782

0.463
  radA Streptococcus pneumoniae Rx1

46.389

99.782

0.463
  radA Streptococcus pneumoniae R6

46.389

99.782

0.463

Multiple sequence alignment