Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   D0T90_RS10310 Genome accession   NZ_CP031699
Coordinates   2222237..2224003 (-) Length   588 a.a.
NCBI ID   WP_123795332.1    Uniprot ID   A0A5P3MTC8
Organism   Neisseria animalis strain ATCC 49930     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217237..2229003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T90_RS10290 (D0T90_10660) tilS 2217326..2218621 (-) 1296 WP_123795328.1 tRNA lysidine(34) synthetase TilS -
  D0T90_RS10295 (D0T90_10665) - 2218953..2219912 (-) 960 WP_123795329.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  D0T90_RS10300 (D0T90_10670) - 2220124..2220528 (+) 405 WP_123795330.1 RNA-binding S4 domain-containing protein -
  D0T90_RS10305 (D0T90_10675) - 2220766..2221950 (-) 1185 WP_123795331.1 hypothetical protein -
  D0T90_RS10310 (D0T90_10680) recD 2222237..2224003 (-) 1767 WP_123795332.1 exodeoxyribonuclease V subunit alpha Machinery gene
  D0T90_RS10315 (D0T90_10685) lolD 2224153..2224851 (-) 699 WP_123795333.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  D0T90_RS10320 (D0T90_10690) - 2224844..2226094 (-) 1251 WP_123795334.1 lipoprotein-releasing ABC transporter permease subunit -
  D0T90_RS10325 (D0T90_10695) - 2226315..2226602 (+) 288 WP_123795335.1 hypothetical protein -
  D0T90_RS10330 (D0T90_10700) - 2226971..2227390 (-) 420 WP_123795336.1 YidB family protein -
  D0T90_RS10335 (D0T90_10705) ruvX 2227877..2228350 (-) 474 WP_123795337.1 Holliday junction resolvase RuvX -
  D0T90_RS10340 (D0T90_10710) - 2228343..2228891 (-) 549 WP_123795452.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 63801.76 Da        Isoelectric Point: 6.4065

>NTDB_id=310531 D0T90_RS10310 WP_123795332.1 2222237..2224003(-) (recD) [Neisseria animalis strain ATCC 49930]
MTPTPVSDLNHSAAFATTVFLSRFAPEEAKIVQPYIEQLFGALQNGHSFIRLNDAQAAELQQAGKIVGGSGNTPLVLQGR
RLFLGRLWQLEHDLAKEIKRLATAETEAVDWLQAAQNLADWFGSAGSNGQRDAAALALLQPFMLITGGPGTGKTTTVAKL
LGLICANSRSSLPRISLAAPTGKAAAHMAKALHRALDGFALADGIKRHLQQLEGQTVHRLLKLRPPQMLPAFDKHSPLPL
DILVVDEASMLDISLLLQLLRALPDGCRVIFLGDPYQLPSVGVGAVLSALVQPTILDGKTHQELSGYLPQHGFTVSEDAP
PLSKNTAHLSVSHRFGADSGIGCLARAVLAGEAEEAWAQFARFPDDLELGSGTFGQQAVKLYGLHEAYWQAVDKGDVALA
YGHAADVVVLTAWRQDAEAFNQAYTDYLRRQARANGVLPYFAGQIIMISRNDYTLDLFNGDIGLIMPSAKQQDTLAAYFP
IADGFKEVAISRLPEFETAFAMTVHKSQGSEYREVWLLPPSVPQNTESEAEGDALAGLNNALLYTGITRARNRFVFWGGQ
SELVAAVHTRKKRQTALKEMLEAVFRED

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=310531 D0T90_RS10310 WP_123795332.1 2222237..2224003(-) (recD) [Neisseria animalis strain ATCC 49930]
ATGACTCCAACCCCCGTTTCCGATTTGAATCATTCTGCTGCATTTGCTACTACGGTGTTTTTATCACGATTTGCGCCCGA
AGAGGCAAAAATCGTGCAACCCTATATAGAACAACTGTTTGGCGCGTTGCAAAACGGACATTCGTTTATCCGCTTGAATG
ACGCGCAAGCAGCCGAATTGCAACAGGCCGGGAAAATTGTCGGCGGCAGCGGCAATACGCCTTTGGTGCTTCAAGGGCGG
AGGCTGTTTTTAGGGCGGCTGTGGCAGCTTGAGCATGATTTGGCAAAAGAAATCAAGCGATTGGCTACGGCAGAAACCGA
GGCGGTGGATTGGTTGCAGGCCGCACAGAATTTGGCAGACTGGTTCGGCAGTGCAGGCAGCAACGGGCAGCGGGACGCGG
CGGCCTTGGCATTGCTCCAGCCGTTTATGTTGATTACCGGCGGACCGGGTACGGGCAAAACCACCACCGTTGCCAAGCTG
CTGGGCTTGATTTGTGCCAACAGCCGAAGCTCTCTGCCCCGGATTTCATTGGCCGCACCCACGGGAAAAGCAGCAGCCCA
CATGGCAAAAGCCCTGCACCGCGCTTTGGACGGCTTCGCCCTTGCAGACGGCATCAAACGGCACTTGCAGCAGTTGGAAG
GGCAAACCGTACACCGTTTGCTGAAACTGCGCCCACCGCAAATGCTGCCCGCGTTTGATAAACATTCGCCGTTGCCGTTG
GATATTTTAGTGGTTGACGAAGCCTCCATGTTGGATATTTCCCTGCTGTTGCAACTGCTGCGTGCGCTGCCGGACGGCTG
CCGGGTCATTTTTCTCGGTGACCCTTACCAACTGCCGTCGGTAGGAGTGGGGGCAGTATTGTCGGCATTGGTGCAACCCA
CGATCTTGGACGGCAAAACCCATCAGGAATTGAGCGGTTATCTTCCGCAACACGGTTTTACCGTCAGCGAAGACGCGCCG
CCGTTGTCAAAAAATACCGCGCATTTGAGCGTCAGCCACCGTTTTGGAGCCGACAGCGGTATCGGCTGTCTGGCAAGGGC
GGTGTTGGCGGGAGAGGCTGAAGAGGCTTGGGCACAGTTTGCGCGCTTTCCCGATGATTTGGAACTCGGCTCGGGAACCT
TCGGGCAGCAGGCAGTCAAGCTCTACGGCCTGCATGAAGCCTATTGGCAGGCCGTGGATAAAGGAGATGTCGCGTTGGCT
TACGGACACGCCGCCGATGTGGTAGTACTGACGGCATGGCGGCAGGATGCGGAAGCATTCAATCAGGCATATACCGATTA
TTTGCGGCGGCAGGCGCGTGCCAACGGTGTTTTGCCTTATTTTGCCGGACAAATCATCATGATTTCCCGCAACGATTACA
CGCTGGATTTATTTAACGGCGATATTGGTTTGATTATGCCGTCTGCAAAACAGCAGGATACCTTGGCCGCCTATTTTCCG
ATTGCAGACGGCTTTAAAGAAGTGGCCATCAGCCGTTTGCCCGAATTTGAAACCGCATTCGCCATGACGGTACACAAGAG
CCAAGGTTCGGAATATCGAGAAGTCTGGCTGTTGCCGCCGAGCGTACCGCAAAACACGGAATCGGAAGCAGAGGGCGACG
CGCTTGCCGGCTTGAACAATGCCCTGTTGTACACCGGCATTACCCGCGCCCGCAACCGCTTTGTGTTTTGGGGCGGGCAG
AGCGAGCTGGTTGCGGCAGTCCATACCCGCAAAAAACGCCAAACCGCGCTGAAAGAAATGTTGGAGGCTGTATTTCGGGA
AGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(499-553)

AAA domain (AAA_30)

(127-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MTC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

62.39

96.769

0.604

Multiple sequence alignment