Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SSUBM407_RS00205 Genome accession   NC_012926
Coordinates   28572..29354 (+) Length   260 a.a.
NCBI ID   WP_012775465.1    Uniprot ID   A0A0H3MWX5
Organism   Streptococcus suis BM407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23572..34354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUBM407_RS00185 (SSUBM407_0018) mreD 24393..24908 (+) 516 WP_002935339.1 rod shape-determining protein MreD -
  SSUBM407_RS00190 (SSUBM407_0019) pcsB 24993..26249 (+) 1257 WP_012774880.1 peptidoglycan hydrolase PcsB -
  SSUBM407_RS00195 (SSUBM407_0020) - 26352..27320 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  SSUBM407_RS00200 (SSUBM407_0021) - 27407..28585 (+) 1179 WP_011922532.1 pyridoxal phosphate-dependent aminotransferase -
  SSUBM407_RS00205 (SSUBM407_0022) recO 28572..29354 (+) 783 WP_012775465.1 DNA repair protein RecO Machinery gene
  SSUBM407_RS00210 (SSUBM407_0023) plsX 29351..30358 (+) 1008 WP_011921644.1 phosphate acyltransferase PlsX -
  SSUBM407_RS00215 (SSUBM407_0024) - 30351..30599 (+) 249 WP_011921645.1 phosphopantetheine-binding protein -
  SSUBM407_RS00220 (SSUBM407_0025) purC 30717..31424 (+) 708 WP_011921646.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30442.96 Da        Isoelectric Point: 5.6789

>NTDB_id=31053 SSUBM407_RS00205 WP_012775465.1 28572..29354(+) (recO) [Streptococcus suis BM407]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFAYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=31053 SSUBM407_RS00205 WP_012775465.1 28572..29354(+) (recO) [Streptococcus suis BM407]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGCCTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MWX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669

Multiple sequence alignment