Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   E4K02_RS10850 Genome accession   NZ_CP038258
Coordinates   2217794..2218309 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2212794..2223309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS10835 (E4K02_10835) - 2213113..2214573 (+) 1461 WP_000004971.1 amino acid permease -
  E4K02_RS10840 (E4K02_10840) - 2214850..2216055 (+) 1206 WP_098713722.1 RtcB family protein -
  E4K02_RS19595 - 2216059..2216217 (+) 159 WP_000692859.1 hypothetical protein -
  E4K02_RS10845 (E4K02_10845) omp38 2216342..2217412 (-) 1071 WP_002046685.1 outer membrane protein Omp38 -
  E4K02_RS10850 (E4K02_10850) fimT 2217794..2218309 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  E4K02_RS10855 (E4K02_10855) - 2218418..2219593 (+) 1176 WP_000129968.1 thiolase family protein -
  E4K02_RS10860 (E4K02_10860) - 2219720..2220163 (+) 444 WP_135013453.1 VOC family protein -
  E4K02_RS10865 (E4K02_10865) - 2220206..2220559 (-) 354 WP_000457787.1 multidrug efflux SMR transporter -
  E4K02_RS10870 (E4K02_10870) - 2220642..2221127 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  E4K02_RS10875 (E4K02_10875) - 2221120..2222763 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=310451 E4K02_RS10850 WP_000477151.1 2217794..2218309(+) (fimT) [Acinetobacter baumannii strain 39741]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=310451 E4K02_RS10850 WP_000477151.1 2217794..2218309(+) (fimT) [Acinetobacter baumannii strain 39741]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGCTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427