Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GLOV_RS01915 Genome accession   NC_010814
Coordinates   378223..379575 (+) Length   450 a.a.
NCBI ID   WP_012468485.1    Uniprot ID   B3E1N6
Organism   Trichlorobacter lovleyi SZ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 373223..384575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLOV_RS01895 (Glov_0396) - 373971..375362 (+) 1392 WP_012468481.1 UbiD family decarboxylase -
  GLOV_RS01900 (Glov_0397) - 375359..376225 (+) 867 WP_012468482.1 4-hydroxybenzoate octaprenyltransferase -
  GLOV_RS01905 (Glov_0398) - 376229..376810 (+) 582 WP_012468483.1 UbiX family flavin prenyltransferase -
  GLOV_RS01910 (Glov_0399) - 376846..378036 (-) 1191 WP_012468484.1 FprA family A-type flavoprotein -
  GLOV_RS01915 (Glov_0400) radA 378223..379575 (+) 1353 WP_012468485.1 DNA repair protein RadA Machinery gene
  GLOV_RS01920 (Glov_0401) dksA 379651..380007 (+) 357 WP_012468486.1 RNA polymerase-binding protein DksA -
  GLOV_RS01925 (Glov_0402) - 380066..381475 (+) 1410 WP_012468487.1 GAF domain-containing sensor histidine kinase -
  GLOV_RS01930 (Glov_0403) - 381619..382323 (-) 705 WP_012468488.1 PilZ domain-containing protein -
  GLOV_RS01935 (Glov_0404) cysS 382441..383904 (+) 1464 WP_012468489.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47181.35 Da        Isoelectric Point: 6.8977

>NTDB_id=31045 GLOV_RS01915 WP_012468485.1 378223..379575(+) (radA) [Trichlorobacter lovleyi SZ]
MRQKTVFSCSQCGSQSPKWLGKCPDCGAWNSMVEEQQPSAAAARSGRPLSSKSVALPIGEVPPQAEVRLGCGIGELDRVL
GGGLVPGSLVLIGGDPGIGKSTLLLQAMHHLAADGPVLYVSGEESAAQTRLRGERLGVSGRQLLVLAENGLEEIVAQVEK
LKPRAVVVDSIQTVWTQALESAPGSVSQVRESAGRLMLLAKGSGIPIFIVGHVTKDGAIAGPRVLEHMVDTVLYFEGDRG
HPYRILRAVKNRFGSTNEIGVFEMKSGGLAEVANPSELFLSERPLDAPGSVVTASLEGSRTLLVEIQALVTPSAYGTPRR
TTIGVDSNRLALLVAVLEKKAGLHLGGQDIFLNVAGGARLNEPAADLAMLLAVASSHLDRPVAAGAVVFGEVGLAGEVRA
VNQPEPRLGEATKLGFKQCILPAGNLRRLSDASLELHGVATVQEVLQFLL

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=31045 GLOV_RS01915 WP_012468485.1 378223..379575(+) (radA) [Trichlorobacter lovleyi SZ]
GTGCGTCAAAAAACCGTTTTCAGTTGCAGCCAGTGTGGCAGCCAGTCTCCCAAGTGGTTGGGTAAATGTCCCGACTGCGG
GGCCTGGAACAGCATGGTGGAGGAACAGCAGCCATCAGCGGCTGCTGCCCGCAGCGGACGTCCTTTGTCGAGCAAAAGTG
TTGCCCTGCCGATTGGCGAGGTGCCGCCTCAGGCCGAGGTGCGGCTTGGTTGCGGTATTGGTGAGCTGGATCGTGTGCTG
GGTGGCGGTCTGGTGCCTGGTTCACTGGTGTTGATCGGCGGCGATCCCGGCATCGGTAAATCAACCCTGCTGCTGCAGGC
GATGCATCATTTGGCTGCTGATGGACCGGTACTGTATGTGTCCGGTGAGGAGTCTGCTGCTCAGACCCGGTTGCGGGGCG
AGCGGCTGGGGGTAAGTGGCCGCCAACTACTGGTGCTGGCGGAAAACGGGCTGGAAGAGATCGTGGCCCAGGTGGAGAAA
CTCAAGCCGCGGGCCGTGGTGGTGGACTCGATCCAGACCGTCTGGACCCAGGCCCTGGAATCTGCCCCCGGTTCGGTCAG
TCAGGTGCGGGAGTCGGCCGGCCGGTTGATGCTGTTGGCCAAAGGCAGCGGTATCCCGATCTTCATTGTGGGCCATGTTA
CCAAGGACGGTGCCATTGCCGGCCCCAGGGTGCTGGAACATATGGTGGATACGGTGCTGTATTTTGAGGGGGATCGCGGT
CACCCCTACCGGATTCTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAGATCGGCGTCTTTGAGATGAAGTCCGG
CGGCCTGGCCGAGGTGGCCAATCCCTCTGAGCTGTTCCTGTCCGAGCGGCCCCTGGATGCACCCGGTTCGGTGGTAACCG
CCTCGCTGGAGGGAAGCCGCACGTTGTTGGTGGAGATCCAGGCTCTGGTGACCCCCAGCGCCTATGGTACCCCCCGCCGG
ACCACCATCGGGGTGGACAGCAACCGTCTGGCACTACTGGTGGCGGTGTTGGAGAAAAAGGCAGGGCTGCATCTGGGGGG
GCAGGATATCTTTCTGAACGTGGCCGGTGGTGCCCGCCTGAATGAACCGGCAGCTGATCTGGCCATGCTGCTGGCAGTGG
CCTCAAGTCATCTGGATCGCCCGGTAGCAGCCGGTGCCGTGGTGTTTGGTGAGGTAGGTCTGGCCGGTGAGGTGCGGGCG
GTTAATCAACCGGAACCAAGGCTGGGTGAGGCAACGAAACTCGGTTTCAAGCAGTGTATCCTGCCGGCCGGGAACCTCCG
GCGGCTTTCTGACGCGAGCCTGGAGCTGCACGGTGTTGCAACGGTGCAGGAGGTACTGCAGTTCCTGCTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(79-217)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3E1N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.733

100

0.571
  radA Streptococcus mitis SK321

52.573

99.333

0.522
  radA Streptococcus pneumoniae Rx1

52.573

99.333

0.522
  radA Streptococcus pneumoniae D39

52.573

99.333

0.522
  radA Streptococcus pneumoniae R6

52.573

99.333

0.522
  radA Streptococcus pneumoniae TIGR4

52.573

99.333

0.522
  radA Streptococcus mitis NCTC 12261

52.349

99.333

0.52

Multiple sequence alignment