Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   E4K02_RS10670 Genome accession   NZ_CP038258
Coordinates   2180619..2180981 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 39741     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2175619..2185981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS10650 (E4K02_10650) - 2176413..2176877 (-) 465 WP_000678923.1 hypothetical protein -
  E4K02_RS10655 (E4K02_10655) - 2176874..2177794 (-) 921 Protein_2069 response regulator -
  E4K02_RS10660 (E4K02_10660) - 2177897..2179975 (-) 2079 WP_000505927.1 methyl-accepting chemotaxis protein -
  E4K02_RS10665 (E4K02_10665) - 2180022..2180558 (-) 537 WP_109267471.1 chemotaxis protein CheW -
  E4K02_RS10670 (E4K02_10670) pilH 2180619..2180981 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  E4K02_RS10675 (E4K02_10675) pilG 2181005..2181388 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  E4K02_RS10680 (E4K02_10680) - 2181671..2182222 (+) 552 Protein_2074 hypothetical protein -
  E4K02_RS10685 (E4K02_10685) - 2182275..2183207 (+) 933 WP_025469473.1 IS5 family transposase -
  E4K02_RS10690 (E4K02_10690) - 2183417..2184535 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=310449 E4K02_RS10670 WP_000101096.1 2180619..2180981(-) (pilH) [Acinetobacter baumannii strain 39741]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=310449 E4K02_RS10670 WP_000101096.1 2180619..2180981(-) (pilH) [Acinetobacter baumannii strain 39741]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACCTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392