Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   E4K02_RS06095 Genome accession   NZ_CP038258
Coordinates   1221626..1222732 (-) Length   368 a.a.
NCBI ID   WP_017725729.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216626..1227732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS06065 (E4K02_06065) cydB 1217775..1218920 (+) 1146 WP_000575152.1 cytochrome d ubiquinol oxidase subunit II -
  E4K02_RS06070 (E4K02_06070) cydX 1218934..1219035 (+) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  E4K02_RS06075 (E4K02_06075) - 1219036..1219335 (+) 300 WP_085916945.1 cyd operon YbgE family protein -
  E4K02_RS06080 (E4K02_06080) - 1219348..1219872 (-) 525 WP_017725658.1 GNAT family N-acetyltransferase -
  E4K02_RS06085 (E4K02_06085) - 1219945..1220616 (-) 672 WP_017725659.1 DUF2057 domain-containing protein -
  E4K02_RS06090 (E4K02_06090) - 1220841..1221437 (-) 597 WP_017725660.1 nitroreductase family protein -
  E4K02_RS06095 (E4K02_06095) pilA 1221626..1222732 (-) 1107 WP_017725729.1 signal recognition particle-docking protein FtsY Machinery gene
  E4K02_RS06100 (E4K02_06100) - 1222840..1223166 (-) 327 WP_000955083.1 hypothetical protein -
  E4K02_RS06105 (E4K02_06105) - 1223267..1223626 (-) 360 WP_000185571.1 hypothetical protein -
  E4K02_RS06110 (E4K02_06110) - 1223842..1224075 (+) 234 WP_000616034.1 hypothetical protein -
  E4K02_RS06120 (E4K02_06120) - 1224399..1224773 (+) 375 WP_001087274.1 DUF2750 domain-containing protein -
  E4K02_RS06125 (E4K02_06125) - 1224914..1225345 (+) 432 WP_000156920.1 CBS domain-containing protein -
  E4K02_RS06130 (E4K02_06130) - 1225396..1226604 (-) 1209 WP_000129944.1 aspartate aminotransferase family protein -
  E4K02_RS06135 (E4K02_06135) grxD 1226832..1227173 (+) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  E4K02_RS06140 (E4K02_06140) - 1227220..1227543 (-) 324 WP_017725663.1 hypothetical protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39847.66 Da        Isoelectric Point: 5.0746

>NTDB_id=310438 E4K02_RS06095 WP_017725729.1 1221626..1222732(-) (pilA) [Acinetobacter baumannii strain 39741]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPGQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=310438 E4K02_RS06095 WP_017725729.1 1221626..1222732(-) (pilA) [Acinetobacter baumannii strain 39741]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTGGTCGAGGCTGCACCTT
CTACAGAACCTGGGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGCCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCTTTGCAAGAAGAGTTGGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTAATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACGACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGACAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451