Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DXY21_RS19895 Genome accession   NZ_CP031694
Coordinates   4000667..4001245 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain SRCM101368     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3995667..4006245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS19855 (DXY21_03998) - 3995908..3996267 (+) 360 WP_003155160.1 hypothetical protein -
  DXY21_RS19860 (DXY21_03999) - 3996388..3996588 (+) 201 WP_003155162.1 DUF3311 domain-containing protein -
  DXY21_RS19865 (DXY21_04000) - 3996585..3998054 (+) 1470 WP_160249436.1 sodium:solute symporter family protein -
  DXY21_RS19870 (DXY21_04001) - 3998095..3998412 (+) 318 WP_003155166.1 YbjQ family protein -
  DXY21_RS19875 (DXY21_04002) - 3998445..3998714 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  DXY21_RS19880 (DXY21_04003) - 3998910..3999620 (+) 711 WP_003155170.1 YrpD family protein -
  DXY21_RS19885 (DXY21_04004) - 3999755..4000126 (-) 372 WP_069473242.1 iron chaperone -
  DXY21_RS19890 (DXY21_04005) - 4000153..4000521 (-) 369 WP_045207079.1 iron chaperone -
  DXY21_RS19895 (DXY21_04006) comK 4000667..4001245 (-) 579 WP_003155179.1 competence protein ComK Regulator
  DXY21_RS19900 (DXY21_04007) - 4001561..4001794 (+) 234 WP_003155181.1 IDEAL domain-containing protein -
  DXY21_RS19905 (DXY21_04008) - 4001825..4002682 (-) 858 WP_003155182.1 SDR family oxidoreductase -
  DXY21_RS19910 (DXY21_04009) - 4002807..4004330 (+) 1524 WP_160249437.1 FAD-dependent oxidoreductase -
  DXY21_RS20970 - 4004564..4004938 (+) 375 Protein_3909 protoglobin domain-containing protein -
  DXY21_RS20975 - 4004948..4005745 (+) 798 WP_371979927.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=310437 DXY21_RS19895 WP_003155179.1 4000667..4001245(-) (comK) [Bacillus velezensis strain SRCM101368]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=310437 DXY21_RS19895 WP_003155179.1 4000667..4001245(-) (comK) [Bacillus velezensis strain SRCM101368]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment