Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DXY21_RS17510 Genome accession   NZ_CP031694
Coordinates   3566813..3567097 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3561813..3572097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS17490 (DXY21_03507) ade 3561919..3563652 (-) 1734 WP_043867058.1 adenine deaminase -
  DXY21_RS17495 (DXY21_03508) ktrC 3563801..3564466 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DXY21_RS17500 (DXY21_03509) - 3564507..3565334 (-) 828 WP_025851463.1 gamma-glutamylcyclotransferase -
  DXY21_RS17505 (DXY21_03510) - 3565336..3566640 (-) 1305 WP_057079986.1 ATP-binding protein -
  DXY21_RS17510 (DXY21_03511) abrB 3566813..3567097 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DXY21_RS17515 (DXY21_03512) mreBH 3567366..3568373 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  DXY21_RS17520 (DXY21_03513) - 3568445..3568579 (+) 135 WP_003154559.1 protein YkpC -
  DXY21_RS17525 (DXY21_03514) - 3568680..3569912 (+) 1233 WP_025851469.1 aminopeptidase -
  DXY21_RS17530 (DXY21_03515) - 3569942..3570850 (-) 909 WP_057079985.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=310424 DXY21_RS17510 WP_024085249.1 3566813..3567097(-) (abrB) [Bacillus velezensis strain SRCM101368]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=310424 DXY21_RS17510 WP_024085249.1 3566813..3567097(-) (abrB) [Bacillus velezensis strain SRCM101368]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment