Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BMULJ_RS13625 Genome accession   NC_010804
Coordinates   2950966..2952471 (+) Length   501 a.a.
NCBI ID   WP_006398255.1    Uniprot ID   -
Organism   Burkholderia multivorans ATCC 17616     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2945966..2957471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMULJ_RS13600 (BMULJ_02730) kdsD 2947217..2948200 (+) 984 WP_006398260.1 arabinose 5-phosphate isomerase KdsD -
  BMULJ_RS13605 (BMULJ_02731) - 2948200..2948736 (+) 537 WP_012212704.1 KdsC family phosphatase -
  BMULJ_RS13610 (BMULJ_02732) lptC 2948740..2949354 (+) 615 WP_006415491.1 LPS export ABC transporter periplasmic protein LptC -
  BMULJ_RS13615 (BMULJ_02733) lptA 2949375..2950040 (+) 666 WP_006398257.1 lipopolysaccharide transport periplasmic protein LptA -
  BMULJ_RS13620 (BMULJ_02734) lptB 2950037..2950813 (+) 777 WP_006398256.1 LPS export ABC transporter ATP-binding protein -
  BMULJ_RS13625 (BMULJ_02735) rpoN/rpoN1 2950966..2952471 (+) 1506 WP_006398255.1 RNA polymerase factor sigma-54 Machinery gene
  BMULJ_RS13630 (BMULJ_02736) raiA 2952630..2952989 (+) 360 WP_006398254.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BMULJ_RS13635 (BMULJ_02737) - 2953185..2953697 (+) 513 WP_035488861.1 PTS sugar transporter subunit IIA -
  BMULJ_RS13640 (BMULJ_02738) hprK 2953826..2954794 (+) 969 WP_006398252.1 HPr(Ser) kinase/phosphatase -
  BMULJ_RS13645 (BMULJ_02739) rapZ 2954873..2955781 (+) 909 WP_006409809.1 RNase adapter RapZ -
  BMULJ_RS13650 (BMULJ_02740) - 2955809..2956444 (+) 636 WP_006415469.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54746.94 Da        Isoelectric Point: 4.8740

>NTDB_id=31042 BMULJ_RS13625 WP_006398255.1 2950966..2952471(+) (rpoN/rpoN1) [Burkholderia multivorans ATCC 17616]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPVSNGEPAI
ANGNGQSSDRAERDEPAGADEYDGYAAGDASDGPQWNLDEFGRASGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTASLDEVLADLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKATDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKVGQGWQAELNPEVVP
KLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=31042 BMULJ_RS13625 WP_006398255.1 2950966..2952471(+) (rpoN/rpoN1) [Burkholderia multivorans ATCC 17616]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAACATCTGGCGCTGACGCCCCAGCTACAGCAGTCGATCCGGCTCCTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTGGCGATGGCGGTCGCCCAGAACCCGCTGCTCGAGAACGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTTGCGGCGGACGGCTCGCTGATCGCGCAGACGCCGCCCGTGTCGAACGGCGAGCCGGCCATC
GCGAACGGCAACGGCCAGTCGAGCGATCGTGCGGAGCGCGACGAACCGGCCGGCGCCGACGAATACGACGGCTATGCGGC
CGGCGACGCGAGCGACGGCCCGCAGTGGAACCTCGACGAATTCGGCCGCGCGAGCGGCGCCTCCGACGACGACGATCTGC
CGCCGCTGCAGGTACAGGAAGCGGCGACGTCGCTGCGCGATCATCTGTCCGCGCAGCTGCGCGTCACGCAGGCGAGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAGTCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAGGTGCT
CGCCGATCTGCCGCCCGAACTCGAAGTCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGATCCGG
CCGGCGTCGGCGCGCGTTCGGCATCGGAATGCCTGAAGCTGCAGCTGCTGCGGCTCGATCCGTCCCCGACGCGCACGCTC
GCGCTCGAGATCGTGTCGCAACATCTGGAACTGCTCGCCGCGCGCGATTTCACGCGGTTGCGCAAGCATCTGAAGGCCAC
CGACGATGCGCTGCGCGACGCACACGCGCTGATCCGCTCGCTCGAGCCGTTCCCGGGCGCGGCCTACGGCAAGGCCGAAG
CCGACTACGTCGTACCCGACATCATCGTGAAGAAGGTGGGACAGGGCTGGCAGGCCGAGCTCAATCCCGAGGTCGTGCCG
AAGCTGCGCATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCCGGCTCGCTGAAGCAGCA
GTTGCAGGAAGCGCGCTGGCTCATCAAGAACATCCAGCAGCGGTTCGACACGATCCTGCGCGTCGCGCAAGCGATTGTCG
AACGTCAGAAGAATTTCTTTGCGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACGGGCAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCGCACGTCTCGACCGACACCGGTGGCGCCGCATCGTCGACCGCCATCCGTGCCCTCATCAAGCAACTGATAG
GAGCCGAAGACCCCAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAAGGCTTCGTGGTCGCGCGC
CGCACGGTTGCGAAATATCGCGAAGCCCTCAGGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.775

100

0.695

Multiple sequence alignment