Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DXY21_RS11950 Genome accession   NZ_CP031694
Coordinates   2339543..2340310 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2334543..2345310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS11920 (DXY21_02377) - 2334826..2336958 (+) 2133 WP_160249255.1 HD family phosphohydrolase -
  DXY21_RS11925 (DXY21_02378) ybeY 2336959..2337432 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  DXY21_RS11930 (DXY21_02379) - 2337413..2337787 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  DXY21_RS11935 (DXY21_02380) - 2337911..2338321 (+) 411 WP_003152976.1 cytidine deaminase -
  DXY21_RS11940 (DXY21_02381) era 2338302..2339207 (+) 906 WP_003152978.1 GTPase Era -
  DXY21_RS11945 (DXY21_02382) - 2339363..2339506 (+) 144 WP_007408286.1 YqzL family protein -
  DXY21_RS11950 (DXY21_02383) recO 2339543..2340310 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  DXY21_RS11955 (DXY21_02384) glyQ 2340612..2341499 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  DXY21_RS11960 (DXY21_02385) glyS 2341492..2343531 (+) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  DXY21_RS11965 (DXY21_02386) ccpN 2343632..2344270 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  DXY21_RS11970 (DXY21_02387) - 2344296..2345108 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=310408 DXY21_RS11950 WP_003152982.1 2339543..2340310(+) (recO) [Bacillus velezensis strain SRCM101368]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=310408 DXY21_RS11950 WP_003152982.1 2339543..2340310(+) (recO) [Bacillus velezensis strain SRCM101368]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment