Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   ES298_RS09440 Genome accession   NZ_CP038253
Coordinates   1825678..1826499 (-) Length   273 a.a.
NCBI ID   WP_000601682.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901929     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1820678..1831499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES298_RS09395 (ES298_09895) - 1821222..1821539 (-) 318 WP_000615769.1 thioredoxin family protein -
  ES298_RS09400 (ES298_09900) - 1821536..1821835 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  ES298_RS09405 - 1822033..1822095 (-) 63 WP_219335288.1 hypothetical protein -
  ES298_RS09410 (ES298_09910) - 1822120..1822311 (-) 192 WP_000291826.1 cell wall-binding protein -
  ES298_RS09415 (ES298_09915) - 1822472..1823146 (-) 675 WP_000725750.1 LiaF transmembrane domain-containing protein -
  ES298_RS09420 (ES298_09920) - 1823152..1823598 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  ES298_RS09425 (ES298_09925) - 1823712..1824215 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  ES298_RS09430 (ES298_09930) - 1824212..1824574 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  ES298_RS09435 rcrQ 1824640..1825671 (-) 1032 WP_000506424.1 ABC transporter ATP-binding protein Regulator
  ES298_RS09440 rcrP 1825678..1826499 (-) 822 WP_000601682.1 ABC transporter permease Regulator
  ES298_RS09445 (ES298_09940) - 1826515..1826985 (-) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  ES298_RS09450 (ES298_09950) - 1827109..1827825 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ES298_RS09455 (ES298_09960) ply 1828706..1830121 (-) 1416 WP_001284363.1 cholesterol-dependent cytolysin pneumolysin -
  ES298_RS09460 (ES298_09965) - 1830132..1830542 (-) 411 WP_000595757.1 hypothetical protein -
  ES298_RS09465 (ES298_09970) - 1830535..1831143 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30604.17 Da        Isoelectric Point: 5.9310

>NTDB_id=310384 ES298_RS09440 WP_000601682.1 1825678..1826499(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901929]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=310384 ES298_RS09440 WP_000601682.1 1825678..1826499(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901929]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593