Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DXY21_RS03060 Genome accession   NZ_CP031694
Coordinates   617920..618357 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 612920..623357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS03045 (DXY21_00605) - 615778..616140 (-) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -
  DXY21_RS03050 (DXY21_00606) hxlA 616372..617007 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  DXY21_RS03055 (DXY21_00607) hxlB 617004..617561 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  DXY21_RS03060 (DXY21_00608) nucA/comI 617920..618357 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DXY21_RS03065 (DXY21_00609) nin/comJ 618379..618777 (+) 399 WP_043866822.1 competence protein ComJ Regulator
  DXY21_RS03070 (DXY21_00610) - 618818..619037 (-) 220 Protein_588 family 1 glycosylhydrolase -
  DXY21_RS20860 - 619036..619314 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  DXY21_RS03080 (DXY21_00612) - 619256..619531 (-) 276 WP_371745793.1 YckD family protein -
  DXY21_RS03085 (DXY21_00613) - 619648..620082 (-) 435 WP_003156592.1 RDD family protein -
  DXY21_RS03090 (DXY21_00614) - 620097..621233 (-) 1137 WP_160249112.1 zinc-dependent alcohol dehydrogenase -
  DXY21_RS03095 (DXY21_00615) - 621298..622500 (-) 1203 WP_070081342.1 GTP-binding protein -
  DXY21_RS20610 - 622645..622773 (+) 129 Protein_594 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=310372 DXY21_RS03060 WP_003156588.1 617920..618357(+) (nucA/comI) [Bacillus velezensis strain SRCM101368]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=310372 DXY21_RS03060 WP_003156588.1 617920..618357(+) (nucA/comI) [Bacillus velezensis strain SRCM101368]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment