Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DXY22_RS15250 Genome accession   NZ_CP031693
Coordinates   3006898..3007701 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM101393     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001898..3012701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS15225 (DXY22_02992) glpQB 3003045..3003776 (-) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -
  DXY22_RS15230 (DXY22_02993) yqiI 3003855..3004475 (-) 621 WP_080477816.1 N-acetylmuramoyl-L-alanine amidase -
  DXY22_RS15235 (DXY22_02994) yqiH 3004490..3004783 (-) 294 WP_003230284.1 lipoprotein -
  DXY22_RS15240 - 3005091..3005243 (+) 153 WP_014480226.1 hypothetical protein -
  DXY22_RS15245 (DXY22_02995) yqiG 3005316..3006434 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  DXY22_RS15250 (DXY22_02997) spo0A 3006898..3007701 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  DXY22_RS15255 (DXY22_02998) spoIVB 3007977..3009257 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  DXY22_RS15260 (DXY22_02999) recN 3009432..3011162 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  DXY22_RS15265 (DXY22_03000) argR 3011199..3011648 (-) 450 WP_003230265.1 arginine repressor ArgR -
  DXY22_RS15270 (DXY22_03001) yqxC 3011746..3012591 (-) 846 WP_160245701.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=310334 DXY22_RS15250 WP_003226427.1 3006898..3007701(-) (spo0A) [Bacillus subtilis strain SRCM101393]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=310334 DXY22_RS15250 WP_003226427.1 3006898..3007701(-) (spo0A) [Bacillus subtilis strain SRCM101393]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment