Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DXY22_RS14260 Genome accession   NZ_CP031693
Coordinates   2829862..2830482 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM101393     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2824862..2835482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS14220 (DXY22_02794) ptsA 2825993..2826499 (-) 507 WP_044052678.1 PTS glucose transporter subunit IIA -
  DXY22_RS14225 (DXY22_02795) ypqA 2826637..2827056 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  DXY22_RS14230 (DXY22_02796) sppG 2827077..2827454 (-) 378 WP_015251832.1 YppG family protein -
  DXY22_RS14235 (DXY22_02797) yppF 2827642..2827830 (+) 189 WP_003230690.1 YppF family protein -
  DXY22_RS14240 (DXY22_02798) yppE 2827869..2828240 (-) 372 WP_003246080.1 YppE family protein -
  DXY22_RS14245 (DXY22_02799) yppD 2828286..2828531 (-) 246 WP_015251831.1 YppD family protein -
  DXY22_RS14250 sspM 2828730..2828834 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  DXY22_RS14255 (DXY22_02800) yppC 2828859..2829821 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  DXY22_RS14260 (DXY22_02801) recU 2829862..2830482 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  DXY22_RS14265 (DXY22_02802) ponA 2830504..2833248 (+) 2745 WP_015251829.1 PBP1A family penicillin-binding protein -
  DXY22_RS14270 (DXY22_02803) ypoC 2833324..2833818 (-) 495 WP_009967579.1 YpoC family protein -
  DXY22_RS14275 (DXY22_02804) nth 2833815..2834474 (-) 660 WP_009967580.1 endonuclease III -
  DXY22_RS14280 (DXY22_02805) dnaD 2834493..2835191 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=310333 DXY22_RS14260 WP_004399067.1 2829862..2830482(+) (recU) [Bacillus subtilis strain SRCM101393]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=310333 DXY22_RS14260 WP_004399067.1 2829862..2830482(+) (recU) [Bacillus subtilis strain SRCM101393]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment