Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   CH556_RS05070 Genome accession   NZ_CP031692
Coordinates   1010264..1012630 (+) Length   788 a.a.
NCBI ID   WP_116945423.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1005264..1017630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS05045 (CH556_05045) - 1005612..1006910 (-) 1299 WP_005657733.1 N-acetylmuramoyl-L-alanine amidase -
  CH556_RS05050 (CH556_05050) tsaE 1006918..1007394 (-) 477 WP_005663230.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CH556_RS05055 (CH556_05055) folK 1007470..1007952 (-) 483 WP_116945424.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CH556_RS05060 (CH556_05060) pcnB 1007961..1009319 (-) 1359 WP_116945442.1 polynucleotide adenylyltransferase PcnB -
  CH556_RS05065 (CH556_05065) dksA 1009567..1010004 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  CH556_RS05070 (CH556_05070) rec2 1010264..1012630 (+) 2367 WP_116945423.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CH556_RS05075 (CH556_05075) msbA 1012671..1014434 (+) 1764 WP_116945422.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CH556_RS05080 (CH556_05080) lpxK 1014507..1015505 (+) 999 WP_112119550.1 tetraacyldisaccharide 4'-kinase -
  CH556_RS05085 (CH556_05085) kdsB 1015576..1016340 (+) 765 WP_116945421.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89715.34 Da        Isoelectric Point: 9.9753

>NTDB_id=310280 CH556_RS05070 WP_116945423.1 1010264..1012630(+) (rec2) [Haemophilus influenzae strain P595-8370]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLKQAQRIT
AQKQMVTFEIQEILHQQDYQTLIATATLVDNLREQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILNLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWLTVSFNLALGLTSLCAGIFMLIIWSIYREPE
VLSLSWQIKRAKFFTLNLSKPLLKNEQINVLRCSFGIILLCFTILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHRVLLTGDAEAKNEQIFARTLGKINVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYLVMERFHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTEFSPWYVRVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=310280 CH556_RS05070 WP_116945423.1 1010264..1012630(+) (rec2) [Haemophilus influenzae strain P595-8370]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTAAAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGACTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGGTGGATAACTTACGAGAACAACGAATTTTCTTAAATTGGAAGGCGAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCCTTACGTCCCCTTTCTGCGCGATTAAATTTTGGCGGATTTGATCGGCAACAATGGTATTTTTCAAAG
GGAATTACTGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAACAAACGGAAGGATTATCTCTACAAGGTTTATTGATTGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTTGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAATTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGCTCACGGTTTCAT
TTAATTTAGCATTGGGTTTAACCTCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGAGCATTTACCGAGAACCTGAG
GTTTTATCATTGAGCTGGCAAATAAAACGAGCAAAATTTTTTACATTAAATCTCAGTAAGCCTTTGCTAAAAAATGAACA
AATCAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAATTAGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCATATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTTGATGA
TGGAAAGCATCGAGTTTTGCTGACGGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGCAAAATTA
ATGTGTTGCAAGTGGGGCATCACGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTCGACCAGATGTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTTGGTTATGGAAAGGTTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGTGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-171)

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

94.797

100

0.948

Multiple sequence alignment