Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CH556_RS02100 Genome accession   NZ_CP031692
Coordinates   413306..413959 (-) Length   217 a.a.
NCBI ID   WP_005694574.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 408306..418959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS02100 (CH556_02100) sxy/tfoX 413306..413959 (-) 654 WP_005694574.1 DNA transformation protein TfoX Regulator
  CH556_RS02105 (CH556_02105) recA 414279..415343 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  CH556_RS02110 (CH556_02110) recX 415423..415881 (+) 459 WP_044332964.1 recombination regulator RecX -
  CH556_RS02115 (CH556_02115) crcB 415878..416264 (-) 387 WP_005694571.1 fluoride efflux transporter CrcB -
  CH556_RS02120 (CH556_02120) - 416264..417082 (-) 819 WP_116945653.1 Cof-type HAD-IIB family hydrolase -
  CH556_RS02125 (CH556_02125) - 417485..418489 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=310260 CH556_RS02100 WP_005694574.1 413306..413959(-) (sxy/tfoX) [Haemophilus influenzae strain P595-8370]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=310260 CH556_RS02100 WP_005694574.1 413306..413959(-) (sxy/tfoX) [Haemophilus influenzae strain P595-8370]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGTTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.539

100

0.995

Multiple sequence alignment