Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ES276_RS07820 Genome accession   NZ_CP038252
Coordinates   1540495..1541784 (-) Length   429 a.a.
NCBI ID   WP_000522316.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535495..1546784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES276_RS07805 (ES276_08330) - 1535910..1538075 (+) 2166 WP_000726272.1 ABC transporter substrate-binding protein/permease -
  ES276_RS07810 (ES276_08335) - 1538075..1538815 (+) 741 WP_001096313.1 amino acid ABC transporter ATP-binding protein -
  ES276_RS07815 (ES276_08340) zwf 1538964..1540451 (+) 1488 WP_000096136.1 glucose-6-phosphate dehydrogenase -
  ES276_RS07820 (ES276_08345) pilA 1540495..1541784 (-) 1290 WP_000522316.1 signal recognition particle-docking protein FtsY Machinery gene
  ES276_RS07825 (ES276_08350) - 1541788..1542606 (-) 819 WP_000763442.1 Cof-type HAD-IIB family hydrolase -
  ES276_RS07830 (ES276_08355) - 1542606..1543400 (-) 795 WP_000153013.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47897.93 Da        Isoelectric Point: 4.1567

>NTDB_id=310255 ES276_RS07820 WP_000522316.1 1540495..1541784(-) (pilA) [Streptococcus pneumoniae strain TVO_1901936]
MGLFDRLFGKKEEPKIEEVVKEALENLDLSEDVDPTFTEVEEVPQEEAEVEIVEQAVFQEEEIQDTVEESQDSEPAVGVS
QEEIEELPNSEELPEEEKLEHEGTVEENNSEVLEPERPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEE
LEELLIMSDVGVQVASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTT
SIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQ
NKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPV
KLIGFGEKIDDIGEFNSENFMKGLLEGLI

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=310255 ES276_RS07820 WP_000522316.1 1540495..1541784(-) (pilA) [Streptococcus pneumoniae strain TVO_1901936]
ATGGGATTGTTTGACCGTCTATTCGGAAAAAAAGAAGAACCTAAAATCGAAGAAGTTGTAAAAGAAGCTCTGGAAAATCT
TGATTTGTCTGAAGATGTTGATCCTACCTTCACAGAAGTTGAGGAAGTTCCTCAGGAAGAAGCAGAGGTTGAAATTGTTG
AACAAGCTGTGTTCCAAGAGGAGGAAATCCAAGACACAGTTGAAGAAAGTCAGGATTCAGAGCCAGCTGTAGGGGTTTCT
CAAGAAGAAATAGAAGAATTACCAAACTCAGAAGAATTACCAGAGGAAGAGAAGCTTGAGCACGAAGGAACTGTAGAAGA
AAATAATTCTGAAGTTCTTGAACCAGAAAGGCCTCAAACAGAAGAAACTGTTCAGGAAAAATATGACCGCAGTCTCAAGA
AGACTCGTACGGGCTTCGGTGCTCGCTTGAACGCCTTCTTTGCTAACTTCCGCTCTGTTGACGAAGAATTTTTCGAGGAA
CTGGAAGAACTGCTGATTATGAGTGATGTTGGTGTCCAAGTCGCTTCTAACTTAACGGAGGAACTACGTTACGAAGCCAA
GCTTGAAAATGCCAAGAAACCTGATGCACTTCGTCGTGTCATCATTGAGAAATTGGTTGAGCTTTATGAAAAGGATGGTA
GCTACGATGAAAGCATCCACTTCCAAGATAACTTGACAGTTATGCTCTTTGTTGGTGTGAATGGTGTTGGGAAAACAACT
TCTATTGGAAAACTAGCCCACCGCTACAAACGAACTGGTAAGAAGGTCATGCTGGTTGCAGCAGATACCTTCCGTGCGGG
TGCAGTAGCTCAGCTAGCTGAATGGGGCCGACGAGTAGATGTTCCAGTAGTAACTGGACCTGAAAAAGCTGATCCAGCCA
GCGTGGTCTTTGATGGTATGGAACGTGCCGTGGCTGAAGGTATCGATATTCTCATGATTGATACTGCTGGTCGTCTGCAA
AATAAGGATAACCTTATGGCTGAGTTGGAAAAGATTGGTCGTATTATCAAACGTGTTGTGCCAGAAGCACCACATGAAAC
CTTCTTGGCACTTGATGCATCAACAGGTCAAAATGCCCTAGTACAGGCCAAAGAATTTTCGAAAATCACACCTTTAACGG
GAATTGTTTTGACTAAGATTGATGGAACTGCTCGAGGAGGTGTGGTTCTAGCCATTCGTGAAGAACTCAATATTCCTGTA
AAATTGATTGGTTTTGGTGAAAAAATCGATGATATTGGAGAGTTTAACTCAGAAAACTTTATGAAAGGTCTCTTGGAAGG
CTTAATCTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(226-425)

SRP54-type protein, helical bundle domain (SRP54_N)

(139-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

35.55

100

0.361