Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   CH582_RS05180 Genome accession   NZ_CP031689
Coordinates   1018652..1021018 (+) Length   788 a.a.
NCBI ID   WP_105894296.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P621-7028     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1013652..1026018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS05155 (CH582_05155) - 1013998..1015295 (-) 1298 Protein_965 N-acetylmuramoyl-L-alanine amidase -
  CH582_RS05160 (CH582_05160) tsaE 1015303..1015779 (-) 477 WP_105894298.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CH582_RS05165 (CH582_05165) folK 1015855..1016337 (-) 483 WP_105894297.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CH582_RS05170 (CH582_05170) pcnB 1016347..1017705 (-) 1359 WP_105894321.1 polynucleotide adenylyltransferase PcnB -
  CH582_RS05175 (CH582_05175) dksA 1017955..1018392 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  CH582_RS05180 (CH582_05180) rec2 1018652..1021018 (+) 2367 WP_105894296.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CH582_RS05185 (CH582_05185) msbA 1021059..1022822 (+) 1764 WP_005672254.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CH582_RS05190 (CH582_05190) lpxK 1022895..1023893 (+) 999 WP_005672252.1 tetraacyldisaccharide 4'-kinase -
  CH582_RS05195 (CH582_05195) kdsB 1023964..1024728 (+) 765 WP_105894295.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89372.91 Da        Isoelectric Point: 10.0133

>NTDB_id=310173 CH582_RS05180 WP_105894296.1 1018652..1021018(+) (rec2) [Haemophilus influenzae strain P621-7028]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLAFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPLQLFTVVVGFLLF
CNPLMPLSVSFWLSCEAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGSTGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWRIYREPE
ISSSNWQIKRAKFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
AGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKNSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=310173 CH582_RS05180 WP_105894296.1 1018652..1021018(+) (rec2) [Haemophilus influenzae strain P621-7028]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACGGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGGATGTTTCATCATTGCGAGCAGAAAAATTGCAACA
AGTGAAAAAACAAACAGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACCGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGGATTGGATTTTACTTGGCGCGTGTTGTGCAAGTATTTTTCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGCTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCCTTCAGCTTTTTACGGTGGTTGTCGGATTCTTGCTTTTC
TGCAATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGAGGCAGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAAGTACTGGGTTAATTTCTGTTTTTCAGGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTACCGAGAACCCGAG
ATTTCATCATCAAACTGGCAAATAAAACGAGCAAAATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGTAAAGGGATTCTTTATGAT
GCGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
CTGCATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGAATAGCGTTTTGCTAACTGGCGACGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

96.827

100

0.968

Multiple sequence alignment