Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   CH582_RS01710 Genome accession   NZ_CP031689
Coordinates   344166..344462 (+) Length   98 a.a.
NCBI ID   WP_050829196.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P621-7028     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339166..349462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS09375 - 340481..340570 (-) 90 Protein_325 ABC transporter -
  CH582_RS01700 (CH582_01700) - 340903..343845 (+) 2943 WP_116961683.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  CH582_RS09335 (CH582_01705) - 343952..344173 (+) 222 WP_038439526.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CH582_RS01710 (CH582_01710) HI0659 344166..344462 (+) 297 WP_050829196.1 helix-turn-helix domain-containing protein Machinery gene
  CH582_RS01715 (CH582_01715) - 344646..346562 (+) 1917 WP_116942002.1 ABC transporter ATP-binding protein -
  CH582_RS01720 (CH582_01720) - 346572..347108 (+) 537 WP_050837764.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  CH582_RS01725 (CH582_01725) - 347124..347675 (+) 552 WP_116942000.1 Sua5/YciO/YrdC/YwlC family protein -
  CH582_RS01730 (CH582_01730) aroE 347679..348485 (+) 807 WP_116941998.1 shikimate dehydrogenase -
  CH582_RS01735 (CH582_01735) - 348497..349255 (+) 759 WP_042601030.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11121.00 Da        Isoelectric Point: 10.5623

>NTDB_id=310152 CH582_RS01710 WP_050829196.1 344166..344462(+) (HI0659) [Haemophilus influenzae strain P621-7028]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQRLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=310152 CH582_RS01710 WP_050829196.1 344166..344462(+) (HI0659) [Haemophilus influenzae strain P621-7028]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCGACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

98.98

100

0.99

Multiple sequence alignment