Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CH611_RS03600 Genome accession   NZ_CP031685
Coordinates   705977..706669 (+) Length   230 a.a.
NCBI ID   WP_116945233.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P650-8603     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700977..711669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH611_RS03580 (CH611_03580) ampD 702255..702809 (-) 555 WP_116945237.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CH611_RS03585 (CH611_03585) pilA 702923..703372 (+) 450 WP_116945236.1 prepilin peptidase-dependent pilin Machinery gene
  CH611_RS03590 (CH611_03590) pilB 703369..704763 (+) 1395 WP_116945235.1 GspE/PulE family protein Machinery gene
  CH611_RS03595 (CH611_03595) pilC 704760..705980 (+) 1221 WP_116945234.1 type II secretion system F family protein Machinery gene
  CH611_RS03600 (CH611_03600) pilD 705977..706669 (+) 693 WP_116945233.1 A24 family peptidase Machinery gene
  CH611_RS03605 (CH611_03605) rho 706723..707985 (-) 1263 WP_005648966.1 transcription termination factor Rho -
  CH611_RS03610 (CH611_03610) metJ 708233..708550 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  CH611_RS03615 (CH611_03615) cueR 708564..708950 (-) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  CH611_RS03620 (CH611_03620) - 709027..709233 (+) 207 WP_005648955.1 heavy-metal-associated domain-containing protein -
  CH611_RS03625 (CH611_03625) - 709319..709525 (+) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  CH611_RS03630 (CH611_03630) - 709610..709816 (+) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  CH611_RS03635 (CH611_03635) - 709901..710107 (+) 207 WP_005689491.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26705.76 Da        Isoelectric Point: 8.9804

>NTDB_id=310030 CH611_RS03600 WP_116945233.1 705977..706669(+) (pilD) [Haemophilus influenzae strain P650-8603]
MIYFIMFLLGGILGIALWFYLSGFITHLQQEIYATYVELFPQNRSPFQPHFASIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWIGFTLIILWTISYLDCHYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKCYYR
KEAFGRGDYWLAMALGSFIRLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=310030 CH611_RS03600 WP_116945233.1 705977..706669(+) (pilD) [Haemophilus influenzae strain P650-8603]
ATGATTTATTTCATAATGTTTTTATTAGGCGGTATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACGCA
TTTGCAGCAAGAGATTTATGCGACTTACGTTGAATTATTTCCACAAAACCGTTCTCCATTTCAACCGCACTTTGCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGAGTTGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGATCGGATTCACACTTATTATTCTTTGGACAATCAGTTATCTTGATTGCCACTATCA
ACTTATTTCTACGACACCCTGTTTATGGTTACTTACTCTAGGATTATTTGGAGCAGACAATAACTTTTCATTGCTAACGT
TATCTGAAAGCATAAAAAGTGCGGCTAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATGTTATTACAGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCGTTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTGCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

96.087

100

0.961
  pilD Haemophilus influenzae Rd KW20

93.478

100

0.935

Multiple sequence alignment