Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   CH613_RS01870 Genome accession   NZ_CP031684
Coordinates   368647..368943 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain P652-8881     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 363647..373943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH613_RS09090 - 364721..364948 (+) 228 WP_275895858.1 PT domain-containing protein -
  CH613_RS01860 (CH613_01860) - 364963..368025 (+) 3063 WP_238145144.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  CH613_RS01865 (CH613_01865) - 368295..368654 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CH613_RS01870 (CH613_01870) HI0659 368647..368943 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  CH613_RS01875 (CH613_01875) - 369060..370976 (+) 1917 WP_012054642.1 ABC transporter ATP-binding protein -
  CH613_RS01880 (CH613_01880) - 370986..371522 (+) 537 WP_012054643.1 type I DNA topoisomerase -
  CH613_RS01885 (CH613_01885) - 371538..372089 (+) 552 WP_012054644.1 Sua5/YciO/YrdC/YwlC family protein -
  CH613_RS01890 (CH613_01890) aroE 372093..372899 (+) 807 WP_012054645.1 shikimate dehydrogenase -
  CH613_RS01895 (CH613_01895) - 372911..373669 (+) 759 WP_012054646.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=309977 CH613_RS01870 WP_005650837.1 368647..368943(+) (HI0659) [Haemophilus influenzae strain P652-8881]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=309977 CH613_RS01870 WP_005650837.1 368647..368943(+) (HI0659) [Haemophilus influenzae strain P652-8881]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTATTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment