Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CH613_RS00280 Genome accession   NZ_CP031684
Coordinates   56569..57285 (-) Length   238 a.a.
NCBI ID   WP_005655922.1    Uniprot ID   A0A0H3PFM8
Organism   Haemophilus influenzae strain P652-8881     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51569..62285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH613_RS00260 (CH613_00260) nrdR 51676..52125 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  CH613_RS00265 (CH613_00265) recC 52180..55545 (-) 3366 WP_005686198.1 exodeoxyribonuclease V subunit gamma -
  CH613_RS00270 (CH613_00270) comQ 55591..55878 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  CH613_RS00275 (CH613_00275) comP 55871..56554 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  CH613_RS00280 (CH613_00280) comO 56569..57285 (-) 717 WP_005655922.1 type II secretion system protein J Machinery gene
  CH613_RS00285 (CH613_00285) comN 57285..57797 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  CH613_RS00290 (CH613_00290) suhB 57997..58800 (+) 804 WP_005659182.1 inositol-1-monophosphatase -
  CH613_RS00295 (CH613_00295) nrfE 58909..60816 (+) 1908 WP_005659178.1 heme lyase NrfEFG subunit NrfE -
  CH613_RS00300 (CH613_00300) - 60816..61346 (+) 531 WP_005659175.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26734.11 Da        Isoelectric Point: 9.5507

>NTDB_id=309971 CH613_RS00280 WP_005655922.1 56569..57285(-) (comO) [Haemophilus influenzae strain P652-8881]
MMKVLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=309971 CH613_RS00280 WP_005655922.1 56569..57285(-) (comO) [Haemophilus influenzae strain P652-8881]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTAGCATTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACAGATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PFM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

100

0.987

Multiple sequence alignment