Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   CH621_RS05555 Genome accession   NZ_CP031683
Coordinates   1077974..1080340 (+) Length   788 a.a.
NCBI ID   WP_116961644.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P662-7189     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072974..1085340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH621_RS05530 (CH621_05530) - 1073323..1074621 (-) 1299 WP_048940956.1 N-acetylmuramoyl-L-alanine amidase -
  CH621_RS05535 (CH621_05535) tsaE 1074629..1075105 (-) 477 WP_005693857.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CH621_RS05540 (CH621_05540) folK 1075181..1075663 (-) 483 WP_048940957.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CH621_RS05545 (CH621_05545) pcnB 1075673..1077031 (-) 1359 WP_048940963.1 polynucleotide adenylyltransferase PcnB -
  CH621_RS05550 (CH621_05550) dksA 1077278..1077715 (-) 438 WP_005630220.1 RNA polymerase-binding protein DksA -
  CH621_RS05555 (CH621_05555) rec2 1077974..1080340 (+) 2367 WP_116961644.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CH621_RS05560 (CH621_05560) msbA 1080381..1082144 (+) 1764 WP_038440957.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CH621_RS05565 (CH621_05565) lpxK 1082217..1083215 (+) 999 WP_038440958.1 tetraacyldisaccharide 4'-kinase -
  CH621_RS05570 (CH621_05570) kdsB 1083286..1084050 (+) 765 WP_038440959.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89667.18 Da        Isoelectric Point: 9.9300

>NTDB_id=309962 CH621_RS05555 WP_116961644.1 1077974..1080340(+) (rec2) [Haemophilus influenzae strain P662-7189]
MKLNLITLAVLLIVSDLTLLFLPQSLLLPWQVAFVIALVLIFLFIFWRKNFLVSLTFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFEIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAEKIADVSSLRVEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKTIWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLLLWYRYVPFSLFQWKNRPFSPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNSTMFSWQLANKLAEGITGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWSIYREPE
VSSSTWKIKRPRFFTLNLSKPLLKTDRINVLRCFFGIILMCFMILLFKQLSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVATRADSPHSCVILVDDGKNSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=309962 CH621_RS05555 WP_116961644.1 1077974..1080340(+) (rec2) [Haemophilus influenzae strain P662-7189]
ATGAAATTAAACTTAATAACTTTAGCTGTTTTGTTAATTGTTTCGGATTTAACCTTATTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTTTCGTTATTGCGCTTGTTCTAATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GTCTTACTTTTTTTGTTGCTTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAACAAGTGGTAACTTTTGAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ACTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCAAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCGCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAG
GGAATTACGGCTGTTGGAACGGTAAAAAGTGCGGAGAAAATTGCTGATGTTTCATCATTGCGTGTAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGGTTATCACTACAAGGTTTATTGATTGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCATTTGGTCAATTTACCAACAAACCAATACCGCTCATCTTATTGCTATTTCTGGTTTACATATTGGGTTGGCTATG
GGGATCGGATTTTACTTGGCGCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGAGCGGTTGGGTGTTTGCTCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTTCTCCAAAAGTGCGGTGGATTTTTAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTAAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACAGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGAGTATTTATCGAGAACCAGAG
GTTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAACTGATCG
AATCAACGTTTTGCGATGTTTTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGCGACACGAGCTGATAGTCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGAATAGCGTTTTGCTAACTGGCGATGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

95.431

100

0.954

Multiple sequence alignment