Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH621_RS03010 | Genome accession | NZ_CP031683 |
| Coordinates | 598517..598930 (+) | Length | 137 a.a. |
| NCBI ID | WP_048951463.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P662-7189 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 593517..603930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH621_RS02990 (CH621_02990) | - | 594005..596599 (-) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
| CH621_RS02995 (CH621_02995) | comA | 596698..597495 (+) | 798 | WP_105872257.1 | pilus assembly protein PilM | Machinery gene |
| CH621_RS03000 (CH621_03000) | comB | 597496..598002 (+) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| CH621_RS03005 (CH621_03005) | comC | 597999..598520 (+) | 522 | WP_105872258.1 | competence protein ComC | Machinery gene |
| CH621_RS03010 (CH621_03010) | comD | 598517..598930 (+) | 414 | WP_048951463.1 | pilus assembly protein PilP | Machinery gene |
| CH621_RS03015 (CH621_03015) | comE | 598940..600277 (+) | 1338 | WP_105872259.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CH621_RS03020 (CH621_03020) | - | 600290..600976 (+) | 687 | WP_005669238.1 | ComF family protein | - |
| CH621_RS03025 (CH621_03025) | nfuA | 601052..601648 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH621_RS03030 (CH621_03030) | nudC | 601715..602509 (+) | 795 | WP_105872260.1 | NAD(+) diphosphatase | - |
| CH621_RS03035 (CH621_03035) | - | 602545..603135 (+) | 591 | WP_005656455.1 | YjaG family protein | - |
| CH621_RS03040 (CH621_03040) | - | 603275..603547 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=309950 CH621_RS03010 WP_048951463.1 598517..598930(+) (comD) [Haemophilus influenzae strain P662-7189]
MKHWFFLIILFFMNCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=309950 CH621_RS03010 WP_048951463.1 598517..598930(+) (comD) [Haemophilus influenzae strain P662-7189]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |