Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   EYQ98_RS06815 Genome accession   NZ_CP038186
Coordinates   1364051..1367443 (+) Length   1130 a.a.
NCBI ID   WP_134778753.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MCC 2514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359051..1372443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ98_RS06805 (EYQ98_06805) addA 1359115..1362807 (+) 3693 WP_003180429.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EYQ98_RS06810 (EYQ98_06810) sbcD 1362873..1364054 (+) 1182 WP_003180431.1 exonuclease subunit SbcD -
  EYQ98_RS06815 (EYQ98_06815) sbcC 1364051..1367443 (+) 3393 WP_134778753.1 exonuclease subunit SbcC Machinery gene
  EYQ98_RS06820 (EYQ98_06820) - 1367488..1367706 (-) 219 WP_016885923.1 spore germination protein -
  EYQ98_RS06825 (EYQ98_06825) - 1367762..1368145 (-) 384 WP_003180437.1 spore germination protein GerPE -
  EYQ98_RS06830 (EYQ98_06830) - 1368142..1368324 (-) 183 WP_003180439.1 hypothetical protein -
  EYQ98_RS06835 (EYQ98_06835) - 1368321..1368935 (-) 615 WP_026579927.1 spore germination protein GerPC -
  EYQ98_RS06840 (EYQ98_06840) - 1368954..1369199 (-) 246 WP_020450873.1 spore germination protein GerPB -
  EYQ98_RS06845 (EYQ98_06845) - 1369212..1369433 (-) 222 WP_020450874.1 spore germination protein -
  EYQ98_RS06850 (EYQ98_06850) - 1369619..1369912 (+) 294 WP_020450875.1 DUF3784 domain-containing protein -
  EYQ98_RS06855 (EYQ98_06855) - 1369995..1370177 (-) 183 WP_020450876.1 aspartyl-phosphate phosphatase Spo0E family protein -
  EYQ98_RS06860 (EYQ98_06860) - 1370340..1371425 (-) 1086 WP_134778754.1 CotH kinase family protein -
  EYQ98_RS06865 (EYQ98_06865) - 1371591..1372094 (+) 504 WP_023856614.1 hypothetical protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 129057.83 Da        Isoelectric Point: 5.5690

>NTDB_id=309875 EYQ98_RS06815 WP_134778753.1 1364051..1367443(+) (sbcC) [Bacillus licheniformis strain MCC 2514]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQARKNEMLAEQAGLGDAGEEALKQAEQHLEEAETLLQSKRRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKKEQIREKESRLHLAETANTLKPYADAFLAAREDAERALREEKQAREQLEQY
EELHKKTECEYENFRRHKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRKANQLAFHIQQLNSDAALEKKRLDQQEALIKELRQEQQAVDQKVKDETERIQALF
AAVERAYALVCETDRSLSETVRLATQKKEEIVAKREQANRDQLAIELAKQLKEGEPCPVCGSVHHEMPAGVGTESPSFKE
TESELEKTEAIIAEAGALAQEFLSAKVALEQQSDHLVSECPFLVKSKHELPETAASIEEGTIPERYNRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKERNRLQNRVGELNDQLNERRKSFGEQFDGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVGFLTKHEQQKEKLTERLFALDKEKLDLRYAVESLNKEINDYQKELMGYPDTAAIDKKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKSGGTPFEKASEVKASILDRDDLARLKEDIQ
MHWDQTKQCESNIKRITEKLDGRSVSEESWEKAAVTKDKAEEAFSKALEERGAAGKALAVIRENHKRFKELEASLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=309875 EYQ98_RS06815 WP_134778753.1 1364051..1367443(+) (sbcC) [Bacillus licheniformis strain MCC 2514]
ATGAAGCCGATTTCTCTGTCTATTAAGGGGCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGTATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGACGCGATGACTCTCGCTTTGTACG
GGAAGGTGGAGCGGGCCGCCAATAATACGCACGGTATTTTGAATCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGATGCCGTCAAGGTCAAAACATC
GATCTGCCGCTTCATTGAAATGAAAGAGGAACAAATCGTCCTGGCCGATAAAGCGAATGAAGTAAACCGAAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGTAAATTCGCCGAATTTCTTTCCTTA
AAAGGAGCGGAGCGGCGGCAGATGCTTCAGCGCCTGTTCAACCTCGAACAATACGGGGACAGGCTCGTCAAAAAACTGAA
GAAACAGGCGCAAACAGCGCAGGCCAGAAAAAATGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAACAGGCGGAACAGCATCTCGAAGAAGCCGAAACCCTTTTGCAAAGCAAGAGGCGCGAACGAGATGCGGAAGCG
CAGCGCTTTGCGGAGTACCAGGAAATTTGGAATCTGCAGCAAGAAAAAGAAAGCTATCTAAAAAAAGAGGCGGAGCTTTT
AAAGAAAAAGGAACAGATCCGGGAAAAAGAAAGCCGCCTGCATCTCGCTGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTTCTGGCAGCGCGGGAAGATGCCGAGCGCGCACTTCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAC
GAAGAGCTTCATAAAAAAACAGAGTGCGAGTACGAGAATTTCAGGCGTCATAAAAATGAAAAAGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTTGCCGCACAGGCAGAAGCTGAGAAAAAGCAGC
GGGAACAGCGCTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAACTGGCCAAGGTGAAAAGCCTGCTTGAACGCGGG
ACAGCCAAGCAAAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCCAGCGAAGAGCGCAAAAACTGCCGGAAGGC
CAATCAGCTTGCTTTTCACATTCAGCAGCTTAACAGCGATGCCGCTTTAGAAAAAAAACGGCTCGATCAGCAGGAGGCGC
TGATCAAAGAGCTCCGGCAAGAACAGCAAGCGGTGGATCAGAAGGTGAAGGATGAAACCGAACGCATCCAGGCATTGTTT
GCCGCTGTCGAACGAGCGTATGCGCTCGTTTGCGAAACGGACAGATCGCTCTCTGAGACCGTCCGTCTCGCGACTCAAAA
GAAAGAAGAGATTGTCGCAAAACGGGAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGAGG
GTGAGCCTTGTCCGGTCTGCGGGTCTGTACATCATGAAATGCCCGCGGGTGTCGGTACGGAAAGCCCGTCCTTTAAAGAG
ACGGAATCCGAACTGGAGAAAACGGAAGCCATCATCGCTGAAGCCGGTGCGCTGGCTCAGGAGTTTCTCTCGGCCAAAGT
GGCACTCGAACAGCAATCCGACCACCTGGTGAGCGAATGCCCGTTTTTAGTCAAGAGCAAACATGAACTGCCTGAAACCG
CTGCATCGATAGAAGAAGGCACCATTCCCGAACGGTACAACCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCAGAGACAAAAAGCCGGATGTCCAAGCTCCTTCACACATATAAAGAGCTCTGCAAGAAACGCGACCAAATCAGCGAGCG
ACTCAGCCATGAAGAAAAGGAGCGTAACAGGCTTCAAAACCGCGTCGGCGAATTAAATGACCAGTTAAATGAACGCCGAA
AAAGCTTCGGCGAACAATTCGACGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGTATCGAAACGAGCGTCGGCTTTCTCACAAAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTCGACCTCCGCTATGCTGTCGAAAGCCTTAATAAAGAAATAAACGATT
ATCAAAAAGAGCTGATGGGCTATCCCGATACAGCTGCAATCGACAAAAAGCTTCAAGACGTGAAAACGCAATTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAAGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACAAA
AGGGTGTGAGCTCGCTTTGCGTGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAATCCGGAGGTA
CACCGTTTGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTAGACCGCGATGATCTTGCCCGGCTGAAAGAAGACATTCAA
ATGCATTGGGATCAGACAAAACAGTGCGAGTCCAATATCAAGCGGATTACGGAAAAGCTTGATGGGAGATCGGTTTCTGA
GGAGAGTTGGGAAAAAGCCGCCGTCACGAAGGACAAAGCTGAGGAGGCATTCAGCAAAGCCTTGGAAGAAAGGGGCGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAACTTGAAGCATCATTGGCTGAATGGCAGACA
TACATCGACCGTCTTGATAAACTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGCGAACTGACAAGACAGAGGTATGCGATTGAAGTCGACTCAGAAGGCG
GTTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGTGGGGAGACGTTTCTGACT
TCACTGGCGCTTGCGCTTGCACTTTCGGCACAGATCCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGGTTTGGCACGCTTGATCAGGATTTGCTGGATACGGTCGTGACCGCATTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCACGTTCAGGAACTTCGGGCCAGGCTGCCGAAGAAGCTGATTGTCCATCCGGCTGAACCGAGCGGC
AAAGGCACAGCTGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

P-loop containing region of AAA domain (AAA_29)

(13-61)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.46

100

0.565