Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   EYQ98_RS01275 Genome accession   NZ_CP038186
Coordinates   267147..267377 (+) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain MCC 2514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262147..272377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ98_RS01245 (EYQ98_01245) ridA 262204..262581 (+) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -
  EYQ98_RS01250 (EYQ98_01250) spoVG 262761..263054 (+) 294 WP_003178198.1 septation regulator SpoVG -
  EYQ98_RS01255 (EYQ98_01255) glmU 263359..264729 (+) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  EYQ98_RS01260 (EYQ98_01260) - 264750..265700 (+) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  EYQ98_RS01265 (EYQ98_01265) - 265781..266407 (+) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  EYQ98_RS01270 (EYQ98_01270) pth 266524..267090 (+) 567 WP_003178208.1 aminoacyl-tRNA hydrolase -
  EYQ98_RS01275 (EYQ98_01275) subA/fin 267147..267377 (+) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  EYQ98_RS01280 (EYQ98_01280) mfd 267442..270975 (+) 3534 WP_003178212.1 transcription-repair coupling factor -
  EYQ98_RS01285 (EYQ98_01285) spoVT 271113..271649 (+) 537 WP_134778727.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=309845 EYQ98_RS01275 WP_003178210.1 267147..267377(+) (subA/fin) [Bacillus licheniformis strain MCC 2514]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=309845 EYQ98_RS01275 WP_003178210.1 267147..267377(+) (subA/fin) [Bacillus licheniformis strain MCC 2514]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776

Multiple sequence alignment