Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CH631_RS02980 Genome accession   NZ_CP031680
Coordinates   598099..598896 (+) Length   265 a.a.
NCBI ID   WP_116939820.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P672-7661     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593099..603896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH631_RS02960 (CH631_02960) recR 593274..593876 (-) 603 WP_005626527.1 recombination mediator RecR -
  CH631_RS02965 (CH631_02965) - 594006..594335 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH631_RS02970 (CH631_02970) - 594488..595333 (-) 846 WP_112088382.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH631_RS02975 (CH631_02975) - 595406..598000 (-) 2595 WP_116939818.1 penicillin-binding protein 1A -
  CH631_RS02980 (CH631_02980) comA 598099..598896 (+) 798 WP_116939820.1 competence protein ComA Machinery gene
  CH631_RS02985 (CH631_02985) comB 598897..599403 (+) 507 WP_116939822.1 competence protein ComB Machinery gene
  CH631_RS02990 (CH631_02990) comC 599400..599921 (+) 522 WP_112084028.1 competence protein ComC Machinery gene
  CH631_RS02995 (CH631_02995) comD 599918..600331 (+) 414 WP_116939824.1 pilus assembly protein PilP Machinery gene
  CH631_RS03000 (CH631_03000) comE 600341..601678 (+) 1338 WP_116939826.1 type IV pilus secretin PilQ family protein Machinery gene
  CH631_RS03005 (CH631_03005) - 601691..602377 (+) 687 WP_012055030.1 ComF family protein -
  CH631_RS03010 (CH631_03010) nfuA 602453..603049 (+) 597 WP_116939827.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31523.93 Da        Isoelectric Point: 6.2328

>NTDB_id=309844 CH631_RS02980 WP_116939820.1 598099..598896(+) (comA) [Haemophilus influenzae strain P672-7661]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSIAQTYLQDFQPFNINILDVASNAILRA
FQYLLNAQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=309844 CH631_RS02980 WP_116939820.1 598099..598896(+) (comA) [Haemophilus influenzae strain P672-7661]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCCCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
TTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAATATTAATATATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGCTCAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.868

100

0.989
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment