Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   CH635_RS05290 Genome accession   NZ_CP031679
Coordinates   1037698..1040064 (+) Length   788 a.a.
NCBI ID   WP_084999775.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P676-2514     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1032698..1045064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH635_RS05265 (CH635_05260) - 1033048..1034346 (-) 1299 WP_038440953.1 LysM peptidoglycan-binding domain-containing protein -
  CH635_RS05270 (CH635_05265) tsaE 1034354..1034830 (-) 477 WP_005693857.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CH635_RS05275 (CH635_05270) folK 1034906..1035388 (-) 483 WP_011271807.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CH635_RS05280 (CH635_05275) pcnB 1035397..1036755 (-) 1359 WP_084999788.1 polynucleotide adenylyltransferase PcnB -
  CH635_RS05285 (CH635_05280) dksA 1037002..1037439 (-) 438 WP_005630220.1 RNA polymerase-binding protein DksA -
  CH635_RS05290 (CH635_05285) rec2 1037698..1040064 (+) 2367 WP_084999775.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CH635_RS05295 (CH635_05290) msbA 1040105..1041868 (+) 1764 WP_038440957.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CH635_RS05300 (CH635_05295) lpxK 1041941..1042939 (+) 999 WP_038440958.1 tetraacyldisaccharide 4'-kinase -
  CH635_RS05305 (CH635_05300) kdsB 1043010..1043774 (+) 765 WP_038440959.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89513.10 Da        Isoelectric Point: 9.9353

>NTDB_id=309826 CH635_RS05290 WP_084999775.1 1037698..1040064(+) (rec2) [Haemophilus influenzae strain P676-2514]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFFRRNVLVYLAFFVVSLGYTHHSALSLLQQAQSIT
AQKQVVTFEIQEILHQQDYQTLIATATLADDLRAQRIFLHWKAKEMPQLSEIWQAEIALRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIIRRHYSPIQLFTVVVAFLIF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFFLVPLILFAVFTNGAVFSWQLANKLAEGITWLISVFQGNWLTVSFNLALVLTALCAGIFMLIIWSIYREPE
ASSSTWKIKRPRFFTLNLSKPLLKNERINVLICSFGIILMCFMILLFKQLNKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHSIVERADNPHSCVILVDDGKHRVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVTERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=309826 CH635_RS05290 WP_084999775.1 1037698..1040064(+) (rec2) [Haemophilus influenzae strain P676-2514]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACCTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTGGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTTCCGTAGAAACGTTTTAGTTT
ATCTTGCCTTTTTTGTTGTTTCTCTAGGTTATACACACCATTCGGCACTTAGCTTGTTACAACAGGCTCAAAGTATTACT
GCTCAAAAACAAGTGGTGACTTTTGAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGGATGACTTACGAGCGCAACGAATTTTTTTACATTGGAAGGCAAAAGAGATGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTGCCTTACGCCCCCTTTCTGCGAGATTAAATTTTGGTGGATTTGATCGGCAACAATGGTATTTTTCAAAG
GGGATTACGGCTGTTGGAACCGTAAAAAGTGCGGTAAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGGTTATCACTACAAGGTTTATTGATTGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGTTTACATATTGGGTTGGCTATG
GGGATCGGATTTTACTTGGCGCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTCGTTCAAATAATAAGGCGACATTATTCGCCCATTCAGCTTTTTACGGTGGTTGTTGCTTTTTTGATTTTT
TGCGATCCATTAATGCCGCTTTCAGTCAGTTTTTGGCTTTCTTGTGGGGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCCCCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTACTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATTGCCGTACCACTTTATAGCTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAATGGAGCGGTTTTTTC
TTGGCAACTTGCAAACAAGTTAGCCGAAGGAATCACTTGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGAGTATTTATCGAGAACCAGAG
GCTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGATATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAACAAACCAA
CTTGGCAGGTAGATACTTTAGATGTAGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGTAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGATGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAAGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCACCGCATTCTATTGTGGAGAGAGCAGATAATCCCCATTCTTGTGTAATTTTAGTCGATGA
TGGAAAACATCGAGTTTTGCTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCTCGCACTTTAGGCAAAATTG
ATGTGTTGCAAGTGGGGCATCACGGAAGTAAAACATCGACAAGTGAATACTTACTTTCTCAGGTTAGACCAGATGTGGCG
ATTATATCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTCTGTTACGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCAGGGCAAGTGAGGGTAAATTTTTTTCAAGATCGATTAGAAATCCAACAAGCACGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(28-171)

Competence protein (Competence)

(204-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.02

100

0.93

Multiple sequence alignment