Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CH635_RS00280 Genome accession   NZ_CP031679
Coordinates   56923..57642 (-) Length   239 a.a.
NCBI ID   WP_011272300.1    Uniprot ID   Q4QLW9
Organism   Haemophilus influenzae strain P676-2514     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51923..62642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH635_RS00260 (CH635_00260) nrdR 52048..52497 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  CH635_RS00265 (CH635_00265) recC 52552..55917 (-) 3366 WP_085000011.1 exodeoxyribonuclease V subunit gamma -
  CH635_RS00270 (CH635_00270) comQ 55963..56250 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  CH635_RS00275 (CH635_00275) comP 56243..56926 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  CH635_RS00280 (CH635_00280) comO 56923..57642 (-) 720 WP_011272300.1 PulJ/GspJ family protein Machinery gene
  CH635_RS00285 (CH635_00285) comN 57642..58154 (-) 513 WP_011272299.1 pilus assembly FimT family protein Machinery gene
  CH635_RS00290 (CH635_00290) suhB 58354..59166 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  CH635_RS00295 (CH635_00295) nrfE 59275..61182 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -
  CH635_RS00300 (CH635_00300) - 61182..61712 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26922.29 Da        Isoelectric Point: 9.3761

>NTDB_id=309800 CH635_RS00280 WP_011272300.1 56923..57642(-) (comO) [Haemophilus influenzae strain P676-2514]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRILQLIGKDLRRLGFRALNAKLTESNL
FLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=309800 CH635_RS00280 WP_011272300.1 56923..57642(-) (comO) [Haemophilus influenzae strain P676-2514]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAATATTACAGTTAATAGGCAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TTTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTTGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACGTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACCTCCCTTGTCGTTGCTCTTTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment