Detailed information NTG0309685

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E4F32_RS04990
• Genome accession: NZ_CP038180
• Coordinates: 1013039..1014031 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1008039..1019031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4F32_RS04960 (E4F32_04960)	ispD	1008100..1008810 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E4F32_RS04965 (E4F32_04965)	ispF	1008810..1009289 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E4F32_RS04970 (E4F32_04970)	truD	1009286..1010335 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
E4F32_RS04975 (E4F32_04975)	surE	1010316..1011077 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E4F32_RS04980 (E4F32_04980)	pcm	1011071..1011697 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E4F32_RS04985 (E4F32_04985)	nlpD	1011882..1012976 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
E4F32_RS04990 (E4F32_04990)	rpoS	1013039..1014031 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E4F32_RS04995 (E4F32_04995)	ygbN	1014125..1015489 (-)	1365	WP_000104459.1	GntP family transporter	-
E4F32_RS05000 (E4F32_05000)	ygbM	1015578..1016354 (-)	777	WP_001136916.1	HPr family phosphocarrier protein	-
E4F32_RS05005 (E4F32_05005)	ygbL	1016359..1016997 (-)	639	WP_001278994.1	aldolase	-
E4F32_RS05010 (E4F32_05010)	otnK	1016994..1018256 (-)	1263	WP_134778521.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=309685 E4F32_RS04990 WP_000081550.1 1013039..1014031(+) (rpoS) [Escherichia coli strain]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=309685 E4F32_RS04990 WP_000081550.1 1013039..1014031(+) (rpoS) [Escherichia coli strain]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715