Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D7Y56_RS24880 Genome accession   NZ_CP038147
Coordinates   5177925..5178722 (-) Length   265 a.a.
NCBI ID   WP_014153661.1    Uniprot ID   A0ABZ1K9S6
Organism   Streptomyces sp. S501     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5172925..5183722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS24865 (D7Y56_24865) - 5173194..5173913 (+) 720 WP_015579025.1 GNAT family N-acetyltransferase -
  D7Y56_RS24870 (D7Y56_24870) - 5173974..5175833 (+) 1860 WP_014153663.1 IucA/IucC family siderophore biosynthesis protein -
  D7Y56_RS24875 (D7Y56_24875) - 5175884..5177851 (+) 1968 WP_014153662.1 ATP-dependent DNA helicase -
  D7Y56_RS24880 (D7Y56_24880) dinR/lexA 5177925..5178722 (-) 798 WP_014153661.1 transcriptional repressor LexA Regulator
  D7Y56_RS24885 (D7Y56_24885) nrdR 5179257..5179772 (+) 516 WP_134666281.1 transcriptional regulator NrdR -
  D7Y56_RS24890 (D7Y56_24890) - 5179920..5182823 (+) 2904 WP_134666283.1 vitamin B12-dependent ribonucleotide reductase -
  D7Y56_RS24895 (D7Y56_24895) - 5183063..5183596 (-) 534 WP_015579032.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28799.61 Da        Isoelectric Point: 7.1467

>NTDB_id=309659 D7Y56_RS24880 WP_014153661.1 5177925..5178722(-) (dinR/lexA) [Streptomyces sp. S501]
MTTTADSATITAHDHRSQSRLEPVHAMNDSVMNAEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=309659 D7Y56_RS24880 WP_014153661.1 5177925..5178722(-) (dinR/lexA) [Streptomyces sp. S501]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCATGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCATGAACGCGGAGGGGCCAGAGCCCGCACGACCCGCGCGATCCCTGCCCGGCCGCCCTCCAGGAATCA
GGGCGGACAGCTCGGGGCTCACCGACCGGCAGCGGCGCGTGATCGAGGTGATCCGGGATTCCGTCCAGCGGCGTGGGTAC
CCTCCGTCGATGCGCGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACCTCGTCCGTGGCCCACCAGCTGATGGCTCTGGA
GCGGAAGGGTTTCCTGCGCCGCGACCCTCACCGGCCGCGCGCGTACGAGGTCCGGGGCTCGGACCAGCCCAGCACGCAGC
AGACGGACACCACCGGAAAGCCCGCGGCGTCGTACGTCCCCCTGGTCGGCCGGATCGCCGCCGGCGGACCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAGCTCTTCGTTCTGAAGGTCGTCGG
TGATTCGATGATCGAGGCAGCGATCATGGACGGCGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACA
TCGTCGCCGCCATGCTGGACGGGGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCAC
AACGCCGCCTACCAGCCGATCCCCGGTGACGAGGCGACGATCCTGGGCAAGGTCGTCGCGGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37