Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   D7Y56_RS21730 Genome accession   NZ_CP038147
Coordinates   4454570..4455628 (+) Length   352 a.a.
NCBI ID   WP_014154266.1    Uniprot ID   A0ABZ1KAM0
Organism   Streptomyces sp. S501     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4449570..4460628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS21715 (D7Y56_21715) - 4450948..4452573 (+) 1626 WP_014154269.1 ABC transporter substrate-binding protein -
  D7Y56_RS21720 (D7Y56_21720) - 4452695..4453624 (+) 930 WP_014154268.1 ABC transporter permease -
  D7Y56_RS21725 (D7Y56_21725) - 4453617..4454558 (+) 942 WP_014154267.1 ABC transporter permease -
  D7Y56_RS21730 (D7Y56_21730) amiE 4454570..4455628 (+) 1059 WP_014154266.1 ABC transporter ATP-binding protein Regulator
  D7Y56_RS21735 (D7Y56_21735) - 4455621..4456763 (+) 1143 WP_014154265.1 dipeptide ABC transporter ATP-binding protein -
  D7Y56_RS21740 (D7Y56_21740) - 4456925..4458553 (+) 1629 WP_033248386.1 ABC transporter substrate-binding protein -
  D7Y56_RS21745 (D7Y56_21745) - 4458646..4459569 (+) 924 WP_014154263.1 ABC transporter permease -
  D7Y56_RS21750 (D7Y56_21750) - 4459562..4460554 (+) 993 WP_015578609.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38484.45 Da        Isoelectric Point: 6.5733

>NTDB_id=309646 D7Y56_RS21730 WP_014154266.1 4454570..4455628(+) (amiE) [Streptomyces sp. S501]
MTIIDKTADVPAPRGSNDESGPLLEVRDLHVEFHTRDGVAKAVNGVNYSVSAGETLAVLGESGSGKSVTAQAIMGILDMP
PGHIPKGEILFRGQDMLKMSNEERRQIRGQKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKEAKAKSIALMDRVR
IPAAKERVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQRDFNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHEIYKRPAHPYTKGLLESIPRLDQKGQELYAIKGLPPNLLHVPSGCAFNPRCTMAQDICRT
EIPALRPVTEQDGTELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=309646 D7Y56_RS21730 WP_014154266.1 4454570..4455628(+) (amiE) [Streptomyces sp. S501]
ATGACCATCATCGACAAGACGGCGGATGTTCCTGCTCCGCGTGGTTCGAACGACGAGAGCGGTCCGCTGCTCGAAGTCCG
TGACCTGCACGTGGAGTTCCACACCCGCGACGGCGTGGCCAAGGCCGTCAACGGCGTGAACTACAGCGTCAGCGCCGGCG
AGACCCTCGCGGTGCTCGGCGAGTCCGGCTCCGGAAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTGGACATGCCT
CCGGGGCACATCCCCAAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTCAAGATGTCCAACGAGGAGCGCCGGCAGAT
CCGCGGCCAGAAGATCGCCATGATCTTCCAGGACGCGCTCTCCTCGCTGAACCCGGTGCTCTCCGTGGGCTACCAGCTCG
GCGAGATGTTCCGCGTGCACCAGGGCCTCTCCAAGAAGGAGGCCAAGGCGAAGTCCATCGCACTGATGGACCGCGTGCGC
ATCCCGGCGGCCAAGGAGCGGGTCAACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCGAT
GGCGCTCGCCCTGGAGCCCGACCTGATCATCGCGGACGAGCCCACCACGGCGCTCGACGTGACCGTCCAGGCCCAGGTCA
TGGACCTGCTCGCGGAGCTCCAGCGCGACTTCAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTGGTCGCCGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCGCTCCGGTCCACGAGATCTACAAGCGCCCGGC
GCACCCGTACACCAAGGGTCTGCTGGAGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTCCTGCACGTGCCGTCCGGCTGCGCCTTCAACCCGCGCTGCACGATGGCGCAGGACATCTGCCGTACG
GAGATCCCGGCCCTGCGCCCGGTGACCGAGCAGGACGGTACCGAGCTGGTCGGCCGCGGCAGCGCCTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.689

84.091

0.435
  amiE Streptococcus thermophilus LMG 18311

51.014

84.091

0.429
  amiE Streptococcus thermophilus LMD-9

51.014

84.091

0.429
  oppD Streptococcus mutans UA159

48.701

87.5

0.426

Multiple sequence alignment